LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g01653	ATGAAACctggaagaaagaagaagtcGGCAGGAAGGGAAGTAGCAAGAGCTGCTCTTGTTTTTCTGGGTGATGCGATCTCTACCGATGGGCTTCCTCAGGAGGACAacggaaaggaaaaagagacaGAAAAGCTGGATTTTGATGTTAAGGAGGAGCGAGCAAACGTCCATGATGGCAGCAAAAGCGGTGATTTTGAGGAACTTGTTGATGAAGGTGCATTCTCCGaaaacaaacaagagaaaaaggtaaaatttgCTGAAAATCTAGAGTTCATGACTGATGAACAAAATAGTAGTCTGGGCCAGGAAAGGAGTGGTGACGTGATGGAAAGTAAGGATAATGGACGGCAGGGTTCTTCATTTGAAAATCCAAGTGATCAAGTTGTGGAAAAGAAGCGTGGCAGGAAGAGTAAGGCTGAGAAGGAGGCTTTACAAAACAAGACTTTGGAGAATAAGGTAAAGGAGAAAGCAGTTGGGCATTCTGAACAAGGTTTTGTGTATATCGGTAACACAAGGATGGAAAGTAAAGACAAAGAAGGGGAAGGTGACACTGTTCGAGAGGATGAAGTGTCTGCTATGACGAACAGTGACAGGCGGACGACAAGGAGCATGACAAGAACAGAAGTGCCACAAGCTGCCCATGATACAAAAGATGCGAGTCTATGGGTTTATTTGGACGGGCATGACCAAAAGGGCAGTGTTGAAAAGGAGGCGCATTATATAGGTGATGTACCTatgaaagagaaggaagatgGTGAGGATGGGAAGCAAACCTGTGGGgttgaaaatgaagatgatgacGGAGAGACTAGGAAAAGGCGTGGTAAGAGGAGAAATAGAACCAAGAAAAATGGTGGTGCTGGGTTGGAAACGGGAAAAGGGACAACTGATTTGAATGTTGTGGTGGAGGCTCAGATGGGGCAGAAGCTAGGTGATATGGATGCAAATATGGGTGCTAATCAATGTGAAATGGAAGAATATGAATTAAAAGAAGTGTCTGATGGGAAAAGGAAAGGTTCAAGGCGTCAGAAGAAAGCTATTGCCACAAAGGAAACAGATGTAGTTTTGGGGGCACATGGTACAACAGATACTTCAGGAAGCAGCATGGATAGAAGCTATACTTTAAGAGCCTGTAAAGTTAATAAACTGGAGGCAAAGACAACAAAAGTCAATAAGCGTCGTGATCCTGAGCATATGGAAAACATATGCTTAATGTGCCATCAATGTCAAAGAAATGACAAAGGTGGAGTTGTTAGGTGCAGAGGGTGTAAGCGGAAACGATATTGCTTTCCATGTATTGAGAATTGGTATCCTCATTGGAAAGAGGAAGATATTGCTGAGGCATGTCCATTTTGCCGTAAAAATTGCAATTGCAAAGCATGCTTGCGGTCTGATGCATTACTTAAAGGTATCAAGGAAAAAGTGGATGACAAGAAAAATGCGGAAAATGTCACTGACATTGAAGGGATGCAGCGCACTAAGTATTTACTACAAATGCTTCTTCCATATCTAAGACAGCTGGATGAAGAACAAAGGAATGAGAAGCAGATAGAAGCTACGAGACAAGGGCTTGCGCTTTCAGTGTTAAAGATAGAAAATGCAAATTGCGGTACAAATGAGCGTGCCTACTGTGACAATTGCAGAACATCAATATTTGATTATCATAGAAGCTGCAGAAACTGTTCTTTTGACCTCTGTTTAGTTTGTTGCCGTGAGATTCGTCAAGGACGGCTACTGGGAGGTGCAGACCCAATTGAGCACAAGTTTATCAGCCGGGGGCTGGACTATCTGCATGGTGGAAAGGAAGACGTTGAAAGATTTGATGTGACAAAGCCTGAGGATCGCGGCTGGTCAAGATCTGGGTGGAAGGCAGCAAGTGATGCTACCATTCCCTGTCCAAAGAACAACAATGGTTGTGAGCACAGTATTCTTGAACTGAGATGCATATTGAGTGATAATCTGATTTCTGAGTTAGTAAAAAAGGCAGAAAATATAACTGAAACATATCTTAAAGAAGTAGCACAAACTACCAAGCAGCAGTGTTCATGTTTGAGTCAAGATGGTAATTCTGTTAGAAATAAGAATGTGAGGAAGGCGGCTTCTCGTGATGATGCAGCTGACAACTATTTGTACTGTCCACGTGCTGTGGATGTCCAGCTTGATGATCTGAAGCATTTTCAGTGGCACTGGAGCAAAGGAGAGCCTGTGATTGTCAGCAATGTGTTGGAACTTACATCTGGTTTAAGCTGGGATCCACTTGTCATGTGGCGTGCATGCCGTGAGATACATGCTACCACACGTAAACAACATTTGGAAGTGAAGGTCATTGATTGCTTGGATTGGTGTGAGGGAGAGATCAATATCCACCAATTCTTTACTGGGTACACAAAGGGCCGCTTTGATAGGGAACTCTGGCCCCAGATATTGAAACTAAAAGATTGGCCTCCCTCTAATTTATTTGAGGAGCGTTTGCCACGGCATTGTGCTGAATTTATCTCTTCCTTGCCCTACAAGGAATATACAGATCCATACAGTGGATTTTTTAACCTTGCTGGGAAGTTGCCGAAAGAAATCCTAAAACCAGACATAGGACCAAAAACTTACATTGCTTATGGAGTTGCTCAGGAGCTTGGGCGTGGTGATTCAGTGACAAAGCTTCATTGTGATATGTCTGATGCAGTAAATGTGTTGACACATACTGCTGAGGTAGTCCTAAAACCTGAGGATCTACCAAAGATAGAGGAGTTGAAAAGAAAGCACCTTGAGCAAGACAGGATGGAGCTATATGTCGATGGTCAGAACCTTGAGCAAGGCAGAAAGGAGGTTGAGAAAATGCAAATGGATCAAGAAAACAGTATGGAGATTGGTGATCCTTCTAATTCTGGAAATATTTTGGCTGGGGATTCCTCTGAGGGAGGTGCCCTCTGGGATATTTTTCGGAGACAGGATGTCCCTAAACTGCAGGAATATCTTAAGAAACATTTCAGAGAATTTAGGCATGTTCATTGCTGTCCGTTACAGcagGTCATTCATCCTATCCATGACCAGACCTTTTATTTGACTGTTGAACATAAGAGGAGGCTGAAGGAGGAGTGTGGCATTGAGCCATGGACATTTGTTCAGAATGTAGGAGATGCTGTTTTTATTCCAGCAGGTTGTCCTCACCAAGTCAGAAATCTGaagTCATGCATTAAGGTTGCCCTTGATTTTGTCTCACCTGAAAATGTTGGTGAGTGCTTCCGTTTGACCGAGGAATTCCGTTTTCTTCCCATAAATCACAGAGCCACGGAGGACAAATTGGAGGTGAAGAAAATGGTTGTTTATGCCGTGGAGAACATTGTGAACGAATTCGAGGAGGCAAGGTCTGGGAAAAAATCAGAGGAAGAGCATCAGTA	3395	0.42	MKPGRKKKSAGREVARAALVFLGDAISTDGLPQEDNGKEKETEKLDFDVKEERANVHDGSKSGDFEELVDEGAFSENKQEKKVKFAENLEFMTDEQNSSLGQERSGDVMESKDNGRQGSSFENPSDQVVEKKRGRKSKAEKEALQNKTLENKVKEKAVGHSEQGFVYIGNTRMESKDKEGEGDTVREDEVSAMTNSDRRTTRSMTRTEVPQAAHDTKDASLWVYLDGHDQKGSVEKEAHYIGDVPMKEKEDGEDGKQTCGVENEDDDGETRKRRGKRRNRTKKNGGAGLETGKGTTDLNVVVEAQMGQKLGDMDANMGANQCEMEEYELKEVSDGKRKGSRRQKKAIATKETDVVLGAHGTTDTSGSSMDRSYTLRACKVNKLEAKTTKVNKRRDPEHMENICLMCHQCQRNDKGGVVRCRGCKRKRYCFPCIENWYPHWKEEDIAEACPFCRKNCNCKACLRSDALLKGIKEKVDDKKNAENVTDIEGMQRTKYLLQMLLPYLRQLDEEQRNEKQIEATRQGLALSVLKIENANCGTNERAYCDNCRTSIFDYHRSCRNCSFDLCLVCCREIRQGRLLGGADPIEHKFISRGLDYLHGGKEDVERFDVTKPEDRGWSRSGWKAASDATIPCPKNNNGCEHSILELRCILSDNLISELVKKAENITETYLKEVAQTTKQQCSCLSQDGNSVRNKNVRKAASRDDAADNYLYCPRAVDVQLDDLKHFQWHWSKGEPVIVSNVLELTSGLSWDPLVMWRACREIHATTRKQHLEVKVIDCLDWCEGEINIHQFFTGYTKGRFDRELWPQILKLKDWPPSNLFEERLPRHCAEFISSLPYKEYTDPYSGFFNLAGKLPKEILKPDIGPKTYIAYGVAQELGRGDSVTKLHCDMSDAVNVLTHTAEVVLKPEDLPKIEELKRKHLEQDRMELYVDGQNLEQGRKEVEKMQMDQENSMEIGDPSNSGNILAGDSSEGGALWDIFRRQDVPKLQEYLKKHFREFRHVHCCPLQQVIHPIHDQTFYLTVEHKRRLKEECGIEPWTFVQNVGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRFLPINHRATEDKLEVKKMVVYAVENIVNEFEEARSGKKSEEEHQ	1131

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g01653	1131	MobiDBLite	consensus disorder prediction	33	89	-	-
	Bva08g01653	1131	CDD	cupin_RmlC-like	1011	1071	-	-
	Bva08g01653	1131	ProSiteProfiles	JmjC domain profile.	843	1087	IPR003347	-
	Bva08g01653	1131	Pfam	JmjC domain, hydroxylase	970	1070	IPR003347	-
	Bva08g01653	1131	ProSiteProfiles	Zinc finger RING-type profile.	403	453	IPR001841	-
	Bva08g01653	1131	MobiDBLite	consensus disorder prediction	239	273	-	-
	Bva08g01653	1131	PANTHER	-	194	1115	-	-
	Bva08g01653	1131	MobiDBLite	consensus disorder prediction	91	105	-	-
	Bva08g01653	1131	Gene3D	Cupin	710	1096	-	-
	Bva08g01653	1131	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	194	1115	IPR045109	GO:0032454\|GO:0033169
	Bva08g01653	1131	MobiDBLite	consensus disorder prediction	126	159	-	-
	Bva08g01653	1131	MobiDBLite	consensus disorder prediction	196	210	-	-
	Bva08g01653	1131	MobiDBLite	consensus disorder prediction	239	294	-	-
	Bva08g01653	1131	MobiDBLite	consensus disorder prediction	23	215	-	-
	Bva08g01653	1131	SUPERFAMILY	Clavaminate synthase-like	718	1111	-	-
	Bva08g01653	1131	MobiDBLite	consensus disorder prediction	172	195	-	-
	Bva08g01653	1131	SMART	cupin_9	824	1087	IPR003347	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g01653	Bva-Chr8	8922786	8932549	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Bva08g01653		JmjC	1.3e-14	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g01653	K15601		-	gmx:100805723	1039.25