Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01650 atgGAGAACAACAACACCTCCAACAACAACGCCAAAGTGGGTTCTGAAGGAGCCAAATCCAACAACAACAGCATCGAAGAAGAACAGCGCCCTGATTTGAATGTAGAGGAACACATACAacaagcagaagaagaaaatgataatgatCAAGAAGAAAGTGGATCTGGGTCGGCTCAATCTCCCCCTCGTCGGCCTTCCAGAACTCCTTTTACTAATCTCAGTCAGGTCGATGCTGACCTTGCCCTTGCGCGGACCCTACAAGAGCAGgAAAGGGCATACATGATGCTGAGAATGAATAATGAAGGAAGCGATTATGGAAGCTGGGAAGCTGGAAGCTATTTGCATGATGATGgggatgattttgatgatcTACATGATGGCACtgatgttgatgatgatgatgaggaagaagaggattatgatgatgaagatgcaTTTGATGCCCATGCGCATGGAAGTGctgaagaaaacaataatcCCAGTATTGAATTTGATCCAGAAGTGTTCTCAAGTGATGAAGCCTATGCAAGAGCATTGCAAGAGgctgaagagagagaaatggccGCTAGGTTATTGGCCCTTGCGGGGATAAATGATCGGGAGGCTGAGGATACAGAGGACCATGGTGCTAATTCTCAGCAGGATGCATGGGAGGATGTTGATCCTGATGAACTTTCATATGAGGAATTACTGGCATTGGGTGAAGTAGTTGGCACTGAGAGCAGAGGTCTTTCAACTGATACTCTTGCCTCTTTGCCTTCAGTTAAGTACAAGATGGGGAGTGATCAACATGGAAGCAATGACACGTGTGTCATTTGCCGGGTAGACTATGAGGATGGCGAGTCCTTGACAGTTCTTTCCTGCAAACATTTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCCGTTTGCAGTGCTGAGGTATCTACTTCTGGTAGCAGCTTGTA 965 0.399 MENNNTSNNNAKVGSEGAKSNNNSIEEEQRPDLNVEEHIQQAEEENDNDQEESGSGSAQSPPRRPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEAGSYLHDDGDDFDDLHDGTDVDDDDEEEEDYDDEDAFDAHAHGSAEENNNPSIEFDPEVFSSDEAYARALQEAEEREMAARLLALAGINDREAEDTEDHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLASLPSVKYKMGSDQHGSNDTCVICRVDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSAEVSTSGSSL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01650 320 MobiDBLite consensus disorder prediction 23 41 - -
Bva08g01650 320 MobiDBLite consensus disorder prediction 101 142 - -
Bva08g01650 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 316 IPR013083 -
Bva08g01650 320 ProSiteProfiles Zinc finger RING-type profile. 269 310 IPR001841 -
Bva08g01650 320 SUPERFAMILY RING/U-box 260 315 - -
Bva08g01650 320 MobiDBLite consensus disorder prediction 1 75 - -
Bva08g01650 320 MobiDBLite consensus disorder prediction 122 142 - -
Bva08g01650 320 Coils Coil 32 52 - -
Bva08g01650 320 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 1 318 - -
Bva08g01650 320 MobiDBLite consensus disorder prediction 199 220 - -
Bva08g01650 320 MobiDBLite consensus disorder prediction 199 215 - -
Bva08g01650 320 Pfam Ring finger domain 267 309 IPR001841 -
Bva08g01650 320 CDD RING-H2_PA-TM-RING 268 309 - -
Bva08g01650 320 MobiDBLite consensus disorder prediction 52 75 - -
Bva08g01650 320 MobiDBLite consensus disorder prediction 1 22 - -
Bva08g01650 320 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 1 318 IPR043312 -
Bva08g01650 320 SMART ring_2 269 309 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01650 Bva-Chr8 8895531 8903136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01650 51 213 C3H Transcription Factor Family AT3G19910 55.294 1.76e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01650 K19045 - gmx:100787418 425.631