Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01641 ATGTCTTCTGCCGGCGAGATAAAGCAGTTCTGCTGCTACAAATGTGATCGAACCGTCGTCGTATCCGTCTCCGCTTCTTCATCGGAACCTCTTTGCCCTCTTTGCAACCAAGGGTTCGTCGAAGAATTggaaaaccctaaccctaataACTCCTTAAACCCCACTCACTTGGCAGAGGGCTTTGatcctctctcttttctccccTTGTTATCTCCCTCAACTTCCACCGTTGTCGACTTCCAAAATCCTCGCTTATTTTCCCATGCATCCGCTTCTGGTTCTCGCTCCTCTACCCGCTCCGATTCCGACATGTTCGATCCTTATGTGTTCCTCCAGAACCGTCTTCGTGACCTTCAGGCTAGCGGAACTAGCTTCCAATTCGAGATCAACAATCTTTCTGAGGCAGGATTTGGCCTTCCGGCCAATATTGGCGATTACTTCCTCGGTCCTGGTTTGGAGCAATTGATTCAGCAGCTGGCGGAGAATGACCCAAATCGTTATGGGACCCCACCGGCATCGAAATCTGCCATCGAGAATCTTCCAACTATTACGGTTTCTGATGAATTGTTAGACTCGGAGATGAACCAATGTGCAGTTTGTCAGGATGAGTTCGAGAAAGATACCCAGGTAAAGCAAATGCCTTGCAAGCATGTATACCATGATGGCTGTTTGATTCCTTGGCTTGAACTGCATAACTCTTGTCCGGTGTGTCGATATGAATTGCCTACTAATGACCCTGATTATGAGAACCAAACTCACAGAGCCCAGGAGAATACTGGTGCGGGGTCGAGAGTAATGAAAGGGTTGGGGAAATATGGAAGAAGATACGGATTGAAGCTGAGAGAGGGACAGAGGTGGACTGAAGATGGGCAAGAGAAAGAGATCAGAGGCATCAGACTCAGCTGCTGCTTTGTTAGTGAGTATGGAAACGTTGGAAGCAACAGATTTTGGCCTGATTTGAATGAAGCAATGTGCTGCCACAAAATGAGGGCATCAAGACAACAGTTTTTCCAATCAGCATTCCCTCCCACCATGAGAGGTATTGTTTATGGCCACAGCGGAAAATTGGAATCCATCTTCTGCAGCTG 1088 0.4596 MSSAGEIKQFCCYKCDRTVVVSVSASSSEPLCPLCNQGFVEELENPNPNNSLNPTHLAEGFDPLSFLPLLSPSTSTVVDFQNPRLFSHASASGSRSSTRSDSDMFDPYVFLQNRLRDLQASGTSFQFEINNLSEAGFGLPANIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKSAIENLPTITVSDELLDSEMNQCAVCQDEFEKDTQVKQMPCKHVYHDGCLIPWLELHNSCPVCRYELPTNDPDYENQTHRAQENTGAGSRVMKGLGKYGRRYGLKLREGQRWTEDGQEKEIRGIRLSCCFVSEYGNVGSNRFWPDLNEAMCCHKMRASRQQFFQSAFPPTMRGIVYGHSGKLESIFCS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01641 362 ProSiteProfiles Zinc finger RING-type profile. 197 238 IPR001841 -
Bva08g01641 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 6 272 - -
Bva08g01641 362 SUPERFAMILY RING/U-box 176 245 - -
Bva08g01641 362 SMART ring_2 197 237 IPR001841 -
Bva08g01641 362 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Bva08g01641 362 CDD RING-H2_RNF126_like 196 238 - -
Bva08g01641 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 244 IPR013083 -
Bva08g01641 362 Pfam Ring finger domain 195 238 IPR001841 -
Bva08g01641 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 6 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01641 Bva-Chr8 8794793 8798257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01641 141 249 C3H Transcription Factor Family AT5G01980 47.706 7.48e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01641 K11982 - lja:Lj5g3v2258550.1 307.375