Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01638 ATGggctttcttattttctctcagaAATTCAAGTTGCCCTTGTGTGCAACACTTGAGCTTCTGCTATTTTGCAGTGTTCTTGGAGGAAGCAATAAAACTGACCAAATAGCCTTACTTGAATTCAAGTCAAAGATAAATGACCCTCTTGGCGTCATGAGCTCATGGAATTTATCGTATCATTTTTTCCAATGGAGTGGAATCACGTGTGGAAAACTCCATCAAAATGTCACCATCCTTAACTTGAGTTCGCAGCGGCTGCAGGGTTCAATATCTCCATACATAGGCGACCTCTCCTTTCTGCAAAGACTAAACCTGAACAACAATAGCTTCAATGGTGAAATTCCTCCTCAGATTGGCAGTCTCCGCAGGCTACAAGTACTTCAACTGGATGAAAACTTGCTCAGTGGAGAAATTCCTTCCAACATATCTGGCTGCTCAAATCTACTATACATCAACCTTGGTTCCAACAGCTTGGTTGGACAGATTCCATCAGAGTTCAGTGCTTTGACAAATCTTGGGGTCTTGGATGTGTCTCATAACATGTCTGGAGAAATTCCTCCCTCTCTTGGGAATTCTATAATGTTGGAATTTCTATACATGCAACACAATTTCTTCCAAGGGAATATTCCTGAGTCGTTAAGTTCATTGAAAGGCATCCAGGTTATAGATTTTTCATACAACAATCTATCCGGAAACATTCCAGAAATTTTGGCAGATTTTGATTCACTCATGAGATTAAACCTATCTTTCAATGATTTTGAGGGGAGGGTTCCAGAAAAAGATTCTGTAACTGTTTGTGTGGCTGTGGCAATGtctattttgtatttcttgtATGCCAAGAAGCCCAGAGTAAAACCCACTTCAAGCTCTTCTGTGAACTCACTCTTGCAAGTGTCCTACCAAAGTCTACTTGAAGCCACCAACAAATTCAGCTCAAGTAATTTAATTGGAGTGGGCAGTTTTGGATCAGTCTACAAAGGCATTCTTGAAAAGGACGAAAAGGTTGTCGCCATAAAGGTGTTAAACCTTGTAAACTCAAGAGCTTCCAGTTTTCAAGCCGAATGCGAGGCCTTAAGGAACATAAGGCACAGAAATTTGGTTAAGCTAATAACAGCATGCTCTAGTATTGATTATCAAGGAAATGATTTCAAGGCGTTGGTGTATGAGTTCATGGCCTACGGAAGCCTAGAAGAGTGGTTGCATCCAATTATCAATAACCACAATCCGGCAAAAAGGTGTTTGAACTTGCTTCAAAAACTTAATATTGCCGTTGATGCAGCGAGTGCATTGGAGTATCTTCATCATTATTGTAAAATACTGATAGTTCATTGTGATTTAAAGCCAAGCAACATACTCTTGAATGAAAAAATGGTGGGACATATAGGAGATTTTGGTTTGGCGAGATTCTTCTATGAAACCTCTCGGAACAATGCTGCTCCTCTCTCAAGCAAAATTGGAATAAAAGGAACTATTGGTGATACTGCTCCAGGAGATGTGTACAGCTATGGCATTGTAATGCTAGAGATGTTTACGGGGAAGAGACCAACATATGAGATGTTCAAAGATGGGATGAATCTGCATGCTTACGCAAAGGCAGGTTTGGCAAAACTAGAAGAAATTTTGGATCCATTTATTCTTGACGAAATAAAAAGAGACATGAGCAGAAGGGACCAAAACAATCAGGGGAACTATGAGGTTGAGGAATGCTTGATTTCAATATTAGAAAGAGGGGTAGCTTGCTTTGATGAATTTCCAAGTGAAAGGATGAGCATCATGGATGCTACAGCTCAGCTCATTGCCGTTAAGAGAAAGCGTCTCAATGGAGAGAATTA 1832 0.3947 MGFLIFSQKFKLPLCATLELLLFCSVLGGSNKTDQIALLEFKSKINDPLGVMSSWNLSYHFFQWSGITCGKLHQNVTILNLSSQRLQGSISPYIGDLSFLQRLNLNNNSFNGEIPPQIGSLRRLQVLQLDENLLSGEIPSNISGCSNLLYINLGSNSLVGQIPSEFSALTNLGVLDVSHNMSGEIPPSLGNSIMLEFLYMQHNFFQGNIPESLSSLKGIQVIDFSYNNLSGNIPEILADFDSLMRLNLSFNDFEGRVPEKDSVTVCVAVAMSILYFLYAKKPRVKPTSSSSVNSLLQVSYQSLLEATNKFSSSNLIGVGSFGSVYKGILEKDEKVVAIKVLNLVNSRASSFQAECEALRNIRHRNLVKLITACSSIDYQGNDFKALVYEFMAYGSLEEWLHPIINNHNPAKRCLNLLQKLNIAVDAASALEYLHHYCKILIVHCDLKPSNILLNEKMVGHIGDFGLARFFYETSRNNAAPLSSKIGIKGTIGDTAPGDVYSYGIVMLEMFTGKRPTYEMFKDGMNLHAYAKAGLAKLEEILDPFILDEIKRDMSRRDQNNQGNYEVEECLISILERGVACFDEFPSERMSIMDATAQLIAVKRKRLNGEN 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01638 610 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 19 168 - -
Bva08g01638 610 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 263 604 - -
Bva08g01638 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Bva08g01638 610 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Bva08g01638 610 SMART serkin_6 310 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva08g01638 610 Gene3D Phosphorylase Kinase; domain 1 276 390 - -
Bva08g01638 610 Pfam Protein kinase domain 312 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva08g01638 610 ProSiteProfiles Protein kinase domain profile. 310 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva08g01638 610 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 150 260 - -
Bva08g01638 610 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 19 168 - -
Bva08g01638 610 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 263 604 - -
Bva08g01638 610 SUPERFAMILY L domain-like 33 259 - -
Bva08g01638 610 Gene3D Transferase(Phosphotransferase) domain 1 391 609 - -
Bva08g01638 610 SUPERFAMILY Protein kinase-like (PK-like) 289 598 IPR011009 -
Bva08g01638 610 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 150 260 - -
Bva08g01638 610 Gene3D Ribonuclease Inhibitor 183 273 IPR032675 -
Bva08g01638 610 Gene3D Ribonuclease Inhibitor 31 182 IPR032675 -
Bva08g01638 610 Pfam Leucine rich repeat 122 180 IPR001611 GO:0005515
Bva08g01638 610 ProSitePatterns Protein kinases ATP-binding region signature. 316 339 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01638 Bva-Chr8 8777341 8779424 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01638 68 604 Receptor kinase-like Gene Family AT3G47570 40.722 2.17e-137 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Bva08g01638 Pkinase 5.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01638 - - pop:18100734 547.354