Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01613 ATGGCGGAAATACCGGGACAGCCCCTTTCCGACACCGGCGCGCCGCAGTATTGGTGCTACCAGTGCAACAAACGGGTCTCCGTAGAAACACAAGACAATCGACCCGACGTTACCTGCCTTGAGTGCAAGAACGGCTTCGTTGAATCTATTCCTTCTACTTCTCTACAGTCACCTGTTACATCTTCTAGCTCTCCCAATCACGTCGGTGATCCGTATTTCGGGTCGCAATTTCTGCAGGTGCTTCAGCTACTCGCGCAATCGGCGCGTGATGATGACGCTTCACCTCCACCACCTCCTAACCGTGTCTCTGGAGGCGATTATCTCAGGATTGAGCTCGGTGGGTGGAATCACGATGGGGAAGATGATGACGACGACGATGAAGACGATGATGTGGACTTTCATAACGAAGAAGAACACGAAGATAATGGGGAACAGGAGGATCGACCCGTAAACGAGGATCAACATCTGGACGAGGAAGATCTGAGGCGTAGGAGACGTGATGTACTGCGACTTAGGATCAGAGATTTGGCGACTCGCACGCGGAGCATGAGGAACCGGATCTTGGATTGGGCCGAGATATTGATGGGTCTGGAAGATAATTCCATAGAGTTTCGGCTTCAAGTACCAGAATCGGATCGACATGTGGGAAGCCCAGAAGACTATGTTGATGCAGCTGAGTATGAAGCTTTACTGCAGACATTGGTGGACAGCGACGGAGGGAGGAGAGGAGCCCCACCGGCGGCAAAGTCAGCGGTGGATGCATTACCGACAGTAAAGATTTTGTCAGAGGATGAGGCTTTGGTCTGTGCTATTTGTAAGGATTTGGTGGGTGTTGGAGATATTGCAAAGAGGTTGCCTTGTGGGCATCGGTACCATGGGGATTGCATACTTCCATGGCTGGGCTCTAGAAATTCATGTCCAGTATGCAGGTTTGAGCTGCCAACAGACGACCATGAATATGAAGAGGAAAGGAGTAAGAGGGTGACATTCACTGCTGGTGGAGCATCAGGTTCCGGTAGTACTGACACCGGTTCGGGTTG 1040 0.5144 MAEIPGQPLSDTGAPQYWCYQCNKRVSVETQDNRPDVTCLECKNGFVESIPSTSLQSPVTSSSSPNHVGDPYFGSQFLQVLQLLAQSARDDDASPPPPPNRVSGGDYLRIELGGWNHDGEDDDDDDEDDDVDFHNEEEHEDNGEQEDRPVNEDQHLDEEDLRRRRRDVLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLQVPESDRHVGSPEDYVDAAEYEALLQTLVDSDGGRRGAPPAAKSAVDALPTVKILSEDEALVCAICKDLVGVGDIAKRLPCGHRYHGDCILPWLGSRNSCPVCRFELPTDDHEYEEERSKRVTFTAGGASGSGSTDTGSG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01613 346 SMART ring_2 269 309 IPR001841 -
Bva08g01613 346 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 32 339 - -
Bva08g01613 346 MobiDBLite consensus disorder prediction 322 346 - -
Bva08g01613 346 MobiDBLite consensus disorder prediction 51 71 - -
Bva08g01613 346 MobiDBLite consensus disorder prediction 331 346 - -
Bva08g01613 346 MobiDBLite consensus disorder prediction 88 159 - -
Bva08g01613 346 Pfam zinc-ribbon 16 50 IPR039525 GO:0061630
Bva08g01613 346 SUPERFAMILY RING/U-box 263 316 - -
Bva08g01613 346 Pfam Ring finger domain 269 310 IPR001841 -
Bva08g01613 346 MobiDBLite consensus disorder prediction 51 70 - -
Bva08g01613 346 MobiDBLite consensus disorder prediction 144 159 - -
Bva08g01613 346 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 32 339 - -
Bva08g01613 346 ProSiteProfiles Zinc finger RING-type profile. 269 310 IPR001841 -
Bva08g01613 346 MobiDBLite consensus disorder prediction 117 143 - -
Bva08g01613 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 316 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01613 Bva-Chr8 8524809 8526237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01613 226 324 C3H Transcription Factor Family AT5G15820 54.902 8.90e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01613 - - gmx:100780991 417.157