Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01596 ATGGCTGATGAATCAGCAGCCCCACAGGCAACGCCACAGCTGGTTGGCAATGCTTTTGTGGAGCAGTATTACTGTATCCTTCATCGAAATCCAGAGCTTGTTCACAGATTTTATCATGACACTAGTGTTCTAAGCCGGCCTGAAGAAGATGGCAGCATGACTACAGTGACCACTATTGAGAGCATAAACAACAAGATCCTCTCTCTGGACTACACGAGCTATAGGGTGGAGATTCTCAGTGCTGATGCTCAACCTTCCTACAAGGAGGGGGTAATGGTTGTTGTAACTGGCTGTCTAACAGGAAAGGACAACCTGAAAAGGAAGTTTACTCAGTCTTTTTTCCTAGCCCCACAGGATAAAGGTTTCTTTGTCTTGAATGATGTGTTTCGATATGTTGATGAGTATAAGTCAGTTGATTTTGATTCTGCCCCCACAAATGATGCTGATGGAAGCTCTCCAATTTACACTCCTGAGCCTGAGTCCAATCATGTTCCTGTTCCCGAAAACCTTCCGCCTACTAGTCAAAATGCTATTGCGGATGCTGAAATTCTTGTCAGCAATGAAGTGAGTGAACCACTGGAGAATGGGAAATTATCAGTTGCTGAAAAGTTGGTGGAAGATACTCATGAGAAAGAGTCTATTCAGCAGGAGCCCATCTCAAGCATCGAGAAAATTTCTTCCAATGCACTGGAAGATACCCCAAAAAAATCTTTTGCATCCAttgTGAATGCTTTGAAAGATAATGCTGCTCCCTTCCATGTAAGGACTTCCCCTGTGAAACCAGTAGAACAACCACGTGTACCTGTTGCACCTGCACCTGAAGCACCGGTACCTAACACTGACACTGTATTGGAAAGGAATAATGATAATGCagGCAAGGCTTATGCAATATTTGTGGCAAATTTGCCTATGAATGCAACAGTAGAACAACTGGAACGTGTTTTCAAGAAATTTGGACCCATTAAGCAGGACGGTGTTCAAGTCAGAAGTAATAagCAACAAGCAtcttgttttggttttgtggAATTTGAATCTGCTAGTTCAATGCAAAGTGCTCTCGAGGCTTCTCCTGTCATGTTGGATGGCCGTAGACTTTCAATTGAAGAGAGGCGAGCAAACAATGATAGGGTTAGGTACTCCGGACGTGGTGGATTCAGAAATGATAACTTTAGGGGGCGTGGCAACTTTGGCGGCGGCCGTGGCTATGGGAGGAATGATTTTGAGAAGCGAGGTGAATTCTCTGGCCGCCCTCGGGGCAATGCTGCTCGCAACGGAGAAACTGTGCCAAGGGGTTATCAGAATGGTGGAAAAGCCACCCCGCCAAGCAGTGAAAGTTCAGTAAAGTA 1346 0.4435 MADESAAPQATPQLVGNAFVEQYYCILHRNPELVHRFYHDTSVLSRPEEDGSMTTVTTIESINNKILSLDYTSYRVEILSADAQPSYKEGVMVVVTGCLTGKDNLKRKFTQSFFLAPQDKGFFVLNDVFRYVDEYKSVDFDSAPTNDADGSSPIYTPEPESNHVPVPENLPPTSQNAIADAEILVSNEVSEPLENGKLSVAEKLVEDTHEKESIQQEPISSIEKISSNALEDTPKKSFASIVNALKDNAAPFHVRTSPVKPVEQPRVPVAPAPEAPVPNTDTVLERNNDNAGKAYAIFVANLPMNATVEQLERVFKKFGPIKQDGVQVRSNKQQASCFGFVEFESASSMQSALEASPVMLDGRRLSIEERRANNDRVRYSGRGGFRNDNFRGRGNFGGGRGYGRNDFEKRGEFSGRPRGNAARNGETVPRGYQNGGKATPPSSESSVK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01596 448 Gene3D - 279 437 IPR012677 -
Bva08g01596 448 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 382 IPR000504 GO:0003723
Bva08g01596 448 Gene3D - 4 136 - -
Bva08g01596 448 MobiDBLite consensus disorder prediction 378 448 - -
Bva08g01596 448 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 3 434 IPR039539 -
Bva08g01596 448 SUPERFAMILY NTF2-like 11 132 IPR032710 -
Bva08g01596 448 CDD NTF2 11 133 IPR018222 -
Bva08g01596 448 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 363 IPR000504 GO:0003723
Bva08g01596 448 MobiDBLite consensus disorder prediction 144 158 - -
Bva08g01596 448 SUPERFAMILY RNA-binding domain, RBD 295 402 IPR035979 GO:0003676
Bva08g01596 448 SMART rrm1_1 296 368 IPR000504 GO:0003723
Bva08g01596 448 MobiDBLite consensus disorder prediction 140 174 - -
Bva08g01596 448 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Bva08g01596 448 PANTHER BNAA02G14660D PROTEIN 3 434 - -
Bva08g01596 448 CDD RRM_SF 297 368 - -
Bva08g01596 448 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Bva08g01596 448 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01596 Bva-Chr8 8396892 8400763 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01596 K24983 - gmx:100805610 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01596 08 8396892 8400763 Bva08g01596 08 8396892 8400763 ECH