Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01547 ATGACTGGTAGAAACAAGGTGAAGCTGCAACTCATAGCCAATGAGTACATGAGGAAGAAAACATTCaataagaggaagaagagtCTGATGAAGAAAGCAAGTGAACTGagcaccctttgtgggatcggCACGTGTGCCATAGTTTTAAGTCCTTATGATTCCAAACCAGAGGTTTGGCCATCAGCTTCAGGAGTCCAAAGGGTGGTGAGCAGGTTCCAGAAAATGCCAGAAATGGagcagaggaagaagatggtGAACCAAGAGAGCTTCATGATGGAGAGGATCTTCAAGGGCAAAGAGAAGCTGAAGAGAAAGATTAGGGACAACTATGTGATGGAGATGACCCAGTTTATGTTTCAGTGCCTTGAAGCAGGGAAGCTTGTCTACAATATCAGCACTGcagatttgaattttctggAATGGCTGGTTGACAGGAACCTCAGTAGAATCAGTAAGAGGATTGAGGCACTGGAAAGCAGCCATGGCCTAAGCCAAGCCCAAGTGGCGGCTTCAACAGAGGCAGATGAAACAGGCAAGGGAAAAGAGGAGGAGGTAGAGAGCATGGAAAGTCAAGAATGGTTTAGGGACTTGATCAATTATTA 602 0.4003 MTGRNKVKLQLIANEYMRKKTFNKRKKSLMKKASELSTLCGIGTCAIVLSPYDSKPEVWPSASGVQRVVSRFQKMPEMEQRKKMVNQESFMMERIFKGKEKLKRKIRDNYVMEMTQFMFQCLEAGKLVYNISTADLNFLEWLVDRNLSRISKRIEALESSHGLSQAQVAASTEADETGKGKEEEVESMESQEWFRDLINY 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01547 200 MobiDBLite consensus disorder prediction 165 190 - -
Bva08g01547 200 CDD MADS_SRF_like 3 86 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bva08g01547 200 ProSiteProfiles MADS-box domain profile. 2 50 IPR002100 GO:0003677|GO:0046983
Bva08g01547 200 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 3 181 - -
Bva08g01547 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 53 IPR002100 GO:0003677|GO:0046983
Bva08g01547 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Bva08g01547 200 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Bva08g01547 200 Gene3D - 15 98 IPR036879 GO:0003677|GO:0046983
Bva08g01547 200 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Bva08g01547 200 MobiDBLite consensus disorder prediction 175 190 - -
Bva08g01547 200 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Bva08g01547 200 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01547 Bva-Chr8 8139618 8140220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01547 4 175 Type I MADS-box Gene Family AT5G48670 50.857 5.68e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva08g01547 SRF-TF 7.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01547 - - gmx:100813231 213.001