Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01540 ATgaccaaaagaagaagaaacatagaagatgaagaagagaaaaacaagaatGATGAGAACATTGACTTGGAGCAGCTAAGAGAAGAAGCAGCGGCAGTTTCAGCTGCTCTTGTTGGAGCAAGAAGGGCAAAAAAACGGTTCATTGGGGTGCGCCAAAGGCCTTCAGGAAGCTGGGTTGCAGAGATCAAAGACACCATACACAAGATAAGACTGTGGCTAGGCACTTACGACACTCCAGAAGAGGCTGCAAGAGCTTATGATGAAGCAGCTTGTTTGCTTCGCGGATCCAATACTCGCACAAATTTCTGGCCTTGCCCCAATTCTCCCTCAAATCCAGCTCTTCCCTCAAAGATTGCTAATCTTCTCCTTCATAAGCTCAAAGCTGCCTCTGCTTCTGCAGTCACTCCTCCTTTTCCTGCTAGCCCAAATGAGCAAAAAGCACAACTTGAAGTGCCCCGTTTTGACAATTTTCTAAGCGTGTCAGAAACTGGGATTGTTGCAGAAAGTTATGGAGTTTCTAGTTTTGCAGatgattttcttcatttgacaGATAATGGGGGTGTTAGAGAAAGTTATGATGATGCTAGTTATAGTTCTGGCGCCATAACTAGCTGTGACTCTAGTTATGAAAGTGCTGAAGTAAATTTTAACCAAGAGGGTTATGCagagaaatttgatttgaagtaTGATACTGGTGGTAATGTTGGCTATGATAACAATGGGATTATGAATGGAAAAGGAGCATTTGGAGACTGTAAAATGGGGTTCTTAGACTTCCAGTTTGTAGACACTGTGGGATCAATTTGTTACTCTTCTCCATTTGAGGTAGCAGAGGAGATGGTGGGGCAAATTGAGGAAGAGAATTACGGGGACGAGCCGCCATTTATAAGAGAAAccatgaagatgatgaagtaTGAACGCAAAGTCTCAGCTTGTCTTTACACCTTCAATGGGGTGTCTGAGTGTTTGAGATTGAAACTAGGATCAGAGAATGCAGGGTA 1001 0.3956 MTKRRRNIEDEEEKNKNDENIDLEQLREEAAAVSAALVGARRAKKRFIGVRQRPSGSWVAEIKDTIHKIRLWLGTYDTPEEAARAYDEAACLLRGSNTRTNFWPCPNSPSNPALPSKIANLLLHKLKAASASAVTPPFPASPNEQKAQLEVPRFDNFLSVSETGIVAESYGVSSFADDFLHLTDNGGVRESYDDASYSSGAITSCDSSYESAEVNFNQEGYAEKFDLKYDTGGNVGYDNNGIMNGKGAFGDCKMGFLDFQFVDTVGSICYSSPFEVAEEMVGQIEEENYGDEPPFIRETMKMMKYERKVSACLYTFNGVSECLRLKLGSENAG 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01540 333 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Bva08g01540 333 Coils Coil 9 43 - -
Bva08g01540 333 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 1 332 - -
Bva08g01540 333 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
Bva08g01540 333 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Bva08g01540 333 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Bva08g01540 333 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 332 - -
Bva08g01540 333 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Bva08g01540 333 MobiDBLite consensus disorder prediction 1 21 - -
Bva08g01540 333 CDD AP2 45 102 IPR001471 GO:0003700|GO:0006355
Bva08g01540 333 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Bva08g01540 333 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01540 Bva-Chr8 8100223 8101224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01540 44 122 AP2-EREBP Transcription Factor Family AT5G19790 72.152 8.69e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva08g01540 AP2 7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01540 K09286 - jre:109003219 270.781