LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g01532	ATGGCTgctatcttttctttattttcaagcTCTCCTTTTGTTTCTCCTTGTATATCCCACAACACCCACTTCTCTTTCCTTGCCAAAGCACCACTGCTTCACCTGAAAAGGCCTCTCTTTGCTAAATCGCAGCTCGCTTCTTTGGAAACAGAAACATCACTACCACCTGCTGTTGAGACTTTCTGGCGGTGGCTCTTCGATGAAGGGATTGTCTCTTCCAAGACCCCAGTGAGGCCTGGCATGGTGCCAGAAGGTTTGGGGCTGATTGCCCAGAGAGACATTTCTCGAAACGAGGTCGTTTTGCAGGTGCCTAAGAGGTTCTGGATAAACCCAGATGCAGTGGCAGCTTCAGAAATTGGGAAAGTATGTAGTGGGTTGAAGCCATGGATATCTGTTGCTTTGTTTCTGATAAGAGAGAGGTCAAGGGATGAATCTCTATGGAAACATTACTTCAAGATTCTGCCGGAGGTTACTGATTCCACTATATATTGGTCAGAGGAGGAGCTCTTTGAGCTTCAGGGCACTCAACTTCTGAACACAACATTGAGTGTGAAAGAATATGTGAAGAGTGAATTTCTGAAagtggaagaagaaattatacTCCCTTATAAGAagcttttcccttttcctATTACATTAGATGACTTCTTCTGGGCATTTGGAATGCTGAGATCAAGGGCATTTTCTCGCCTTCCTAATGAGAATTTAGTTTTGATTCCCCTGGCTGACTTGATAAATCACAGCACCAGAGTAACCACCGAAGATAATGCTTATGAAGTCAAAGGAGGAGGCCTTTTCTCTAGGGACTACTTGTTTTCTCTAAGAAGCCCTCTTTCTGTCAAGACTGGGGAGCAGATATATATTCAATACGATTTAAACAAGACCAATGCAGAGTTGGCTTTGGACTATGGTTTCATTGAACCAACTTCGGAGCGGAATGCATTTACACTGACACTAGGGATATCTGAATCAGACCCATTTTTTGATGACAAACTAGACGTTGCTGAGAGCAATGGTTTTGGTGAGACTGCATACTTTGACATATTCGATGACAGGCCACTTCCACCAGGACTGCTTCCATATCTCCGGCTGGTGGCGTTAGGGGGCACCGATGCTTTCCTGTTGGAAGCATTATTCAGGAACACCATCTGGGATCATCTTCAATTGCCCATGAGCCGCGACAATGAGGAGCTACTATGCCGAGTGGTTCGAGAGGCCTGCAAATCTGCCCTTGCTGGTTATCATACAACCATTGAAGAGGATGAGAAGTTGAAAGGAGCAAATCTAGATCGGAGGCTTGCAATGGCAATCGGAGTAAGACAGGGGGAGAAGAAGGTGCTACAGGAACTTGACAGGTTCTTTGAAGAGAAGGAATTAGAATTGAATGAGTTAGAATATTATCAAGAAAGGAGGCTTAAGGAACTTGGTCTCTGCGGAGAAAATGGTGATATCCTTGGGGACCTCGGCAAGTTCATGTA	1478	0.4323	MAAIFSLFSSSPFVSPCISHNTHFSFLAKAPLLHLKRPLFAKSQLASLETETSLPPAVETFWRWLFDEGIVSSKTPVRPGMVPEGLGLIAQRDISRNEVVLQVPKRFWINPDAVAASEIGKVCSGLKPWISVALFLIRERSRDESLWKHYFKILPEVTDSTIYWSEEELFELQGTQLLNTTLSVKEYVKSEFLKVEEEIILPYKKLFPFPITLDDFFWAFGMLRSRAFSRLPNENLVLIPLADLINHSTRVTTEDNAYEVKGGGLFSRDYLFSLRSPLSVKTGEQIYIQYDLNKTNAELALDYGFIEPTSERNAFTLTLGISESDPFFDDKLDVAESNGFGETAYFDIFDDRPLPPGLLPYLRLVALGGTDAFLLEALFRNTIWDHLQLPMSRDNEELLCRVVREACKSALAGYHTTIEEDEKLKGANLDRRLAMAIGVRQGEKKVLQELDRFFEEKELELNELEYYQERRLKELGLCGENGDILGDLGKFM	492

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bva08g01532	492	Gene3D	set domain protein methyltransferase, domain 1	55	306	-	-
Bva08g01532	492	PANTHER	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	37	483	-	-
Bva08g01532	492	ProSiteProfiles	SET domain profile.	68	291	IPR001214	GO:0005515
Bva08g01532	492	ProSiteProfiles	Plant LSMT protein-lysine methyltransferase family profile.	1	490	IPR011192	GO:0009507\|GO:0030785
Bva08g01532	492	Pfam	Rubisco LSMT substrate-binding	323	447	IPR015353	-
Bva08g01532	492	PIRSF	RMT_SET	1	491	IPR011192	GO:0009507\|GO:0030785
Bva08g01532	492	Pfam	SET domain	85	290	IPR001214	GO:0005515
Bva08g01532	492	PANTHER	[FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC	37	483	-	-
Bva08g01532	492	SUPERFAMILY	SET domain	55	311	IPR046341	-
Bva08g01532	492	SUPERFAMILY	RuBisCo LSMT C-terminal, substrate-binding domain	315	485	IPR036464	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g01532	Bva-Chr8	8064505	8066858	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva08g01532	61	249	NAC Transcription Factor Family	AT3G56570	28.141	4.16e-09	57.0

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Bva08g01532		SET	9.2e-09	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g01532	K00592		-	gmx:100818113	735.332

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