Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01511 ATGGAGGAAGAGTTACATATTCGACTTCATCGTCTGGGTGGTGTTTGTTGTCTCTTGCGGCATGATCGCGTTCGCCAAATGATGGGCAGGGTAAAGCTAAAGATAAAGAAGCTCGAGAACACAAATGGCCGTCAGGCAACCTATGCTAAAAGGAAGCAGGGGATCATGAAAAAGGCCTCCGAGTTATCTATACTGTGCGATGTAGATATTATACTACTGATGTTCTCACCAAGCGGCAAGCCTTCATTATGCTGGGGGGGTCCCAGtaaaatagaggaggttATCGCAAAGTTTGCTCAGCTAACACCACAAGAAAGGGCGAAAAGGAAGTTGGAGAGTCTTGAAGGACTAAAGAAAACGTTTAAGAAGTTGGATCATGATGTAAATATACAAGAGTTTCTGGGTACAAGTAGTAAAACTACCGAGGACCTAAACAATCAATCAAGAGCATTACAGACTCAACTTTATGAAATGCACAAGAGACTAAACCATTGGACTGAacctaataaaattaactgtGTGGAGCAATTAGGACAAATGGAAAATTCACTCAGGGAGTCAATTAATCAAATTCGGTCACGCAAGGAAACTCTTCAAAAGCAGCAAGTTGTTTCATTGCAATGTGGTAATCAGTTCAATGAGATGCATATTCCCTTCCGAATGAGTTCTGAGCAAAATCTCCAACCTCTTTCGTGGATTCCCAACACTGACGACCAACATATGGTTTTACCAGAGGATTCAAATTTGCTCATCCACAGAGATGTAGAGGGCTCTGCAAGCTCCTCTTTTGGGAGTTATGCTAGTTACCTTGGCACAAGTACAAAAACAGATATTTCTAATCCCGGGCAAGAAAATGGTGTCCTCAGTGATCTGAGCAGTACCGCTCCTCCAAGAGTACAACTGGGAGGGCAATTTCCATACCTACCGTACAATCTAAATTTACTAAATGATACCAAGTTCCAACCAGCTGCAGAGATAAACCCACAAGAAAACTCAGTAGATTATCATGTTAATGGAAGCTTTGAAGCCCCTAGACCTGGGTTTGAAACTAACCACCCTGGATGGGCTTCCACGTCGGGGCCTTGTGCTGTTACTGTCTTTGATGAGCATTTGTTTGCCCAGGCAAGTTTCCCTCAAGTGAACTATGGCTTCACATA 1157 0.4209 MEEELHIRLHRLGGVCCLLRHDRVRQMMGRVKLKIKKLENTNGRQATYAKRKQGIMKKASELSILCDVDIILLMFSPSGKPSLCWGGPSKIEEVIAKFAQLTPQERAKRKLESLEGLKKTFKKLDHDVNIQEFLGTSSKTTEDLNNQSRALQTQLYEMHKRLNHWTEPNKINCVEQLGQMENSLRESINQIRSRKETLQKQQVVSLQCGNQFNEMHIPFRMSSEQNLQPLSWIPNTDDQHMVLPEDSNLLIHRDVEGSASSSFGSYASYLGTSTKTDISNPGQENGVLSDLSSTAPPRVQLGGQFPYLPYNLNLLNDTKFQPAAEINPQENSVDYHVNGSFEAPRPGFETNHPGWASTSGPCAVTVFDEHLFAQASFPQVNYGFT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01511 385 Gene3D - 41 124 IPR036879 GO:0003677|GO:0046983
Bva08g01511 385 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 81 IPR002100 GO:0003677|GO:0046983
Bva08g01511 385 Coils Coil 104 124 - -
Bva08g01511 385 SMART madsneu2 28 87 IPR002100 GO:0003677|GO:0046983
Bva08g01511 385 ProSiteProfiles MADS-box domain profile. 28 80 IPR002100 GO:0003677|GO:0046983
Bva08g01511 385 PANTHER SERUM RESPONSE FACTOR HOMOLOG 28 375 - -
Bva08g01511 385 SUPERFAMILY SRF-like 27 111 IPR036879 GO:0003677|GO:0046983
Bva08g01511 385 CDD MADS_SRF_like 29 109 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bva08g01511 385 PRINTS MADS domain signature 65 86 IPR002100 GO:0003677|GO:0046983
Bva08g01511 385 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Bva08g01511 385 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Bva08g01511 385 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 28 375 - -
Bva08g01511 385 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01511 Bva-Chr8 7954329 7959593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01511 28 378 Type I MADS-box Gene Family AT2G03060 48.556 2.89e-108 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva08g01511 SRF-TF 9.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01511 - - lang:109356063 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01511 08 7954329 7959593 Bva08g01511 08 7954329 7959593 ECH