LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g01510	ATGATAATCCAAGTCTCTCTTCTAACCCTTGTCTATTGTTCACCCCATAATCCATTTCCAAAACCATTTCAAAACCCTAACTTTAATCTCACAAGACCCTCCTTCACTTCCTTCAATGGCTCTTTACCCTTCAGATCCCTCATCCAATTTTCCCGCCAAGCAGAAGCCCTTCCTCTTTCCACCTCCGACTCTGGCCTCCTTTTCCGGGAAAAAATCATCTACCTCGAGAAACTCAATGTTAATCCCCACAAAGCCCTCCGAGTTAATCCAAATTTTCGATCAGCTCCACTCTCTTCTCTCAAATCCGTAGAAGATTGCCTCTCCACCATGGGCATAGAGCGTTCTGAAATGGGTCGGATCCTCGACATGTGCCCCCAGCTGCTTACCTGCGACCCCCATTACGATCTCTACCCTATATTGGATTTCTTGATGAATGAAGCAAAAATCCCATTCCCTGATATTCGGAAGTCGATTATACGGTGCCCAAGGTTGTTAGTTTGCAGCGTGGACGAACAACTGAGACCTGCATTACTCTTCTTGAGGAATTTGGGGTTTGTGGGTTCGAATTTCATCAATTCCCAGACTGCATTGCTGATGGTTTCAAGTGTGGAAACCACCCTTCTGCCAAAGATTGAATATTTACAGAGTTTGGGCTTTACTCGTGAGGAAGTAGTAACTATGGTGATAAGGTCACCTGCGTTGTTGACATTTAGTATCAGGAACAATTTTATGCCAAAGGTGGAATATTTTTTGGAGGAGATGAATGGGGATATAGCTGAATTGAAGAGGTTTCcacaatatttttcatatagtttggagagaaaaattaaGCCAAGACATAGGCTATTACTTAAGCAAAGATTTTCACTTCCATTGGCGGAGATGTTGAAGGTTAGTGATGGTGAATTTAATGCTAGGTTAATTGAAATGCGACTACAGTCACTTGAGGGAAGGTA	956	0.4184	MIIQVSLLTLVYCSPHNPFPKPFQNPNFNLTRPSFTSFNGSLPFRSLIQFSRQAEALPLSTSDSGLLFREKIIYLEKLNVNPHKALRVNPNFRSAPLSSLKSVEDCLSTMGIERSEMGRILDMCPQLLTCDPHYDLYPILDFLMNEAKIPFPDIRKSIIRCPRLLVCSVDEQLRPALLFLRNLGFVGSNFINSQTALLMVSSVETTLLPKIEYLQSLGFTREEVVTMVIRSPALLTFSIRNNFMPKVEYFLEEMNGDIAELKRFPQYFSYSLERKIKPRHRLLLKQRFSLPLAEMLKVSDGEFNARLIEMRLQSLEGR	318

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g01510	318	PANTHER	CGI-12 PROTEIN-RELATED	53	316	IPR003690	GO:0003690\|GO:0006355
	Bva08g01510	318	SMART	mt_12	258	289	IPR003690	GO:0003690\|GO:0006355
	Bva08g01510	318	SMART	mt_12	155	186	IPR003690	GO:0003690\|GO:0006355
	Bva08g01510	318	SMART	mt_12	188	220	IPR003690	GO:0003690\|GO:0006355
	Bva08g01510	318	SMART	mt_12	225	257	IPR003690	GO:0003690\|GO:0006355
	Bva08g01510	318	SMART	mt_12	118	150	IPR003690	GO:0003690\|GO:0006355
	Bva08g01510	318	Gene3D	Transcription termination factor 3, mitochondrial	74	316	IPR038538	-
	Bva08g01510	318	Pfam	mTERF	153	303	IPR003690	GO:0003690\|GO:0006355
	Bva08g01510	318	Pfam	mTERF	106	182	IPR003690	GO:0003690\|GO:0006355
	Bva08g01510	318	PANTHER	TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC	53	316	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g01510	Bva-Chr8	7953109	7954310	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Bva08g01510		mTERF	9.1e-32	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g01510	K15032		-	zju:107428933	400.593