Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01509 ATGAAGGCATGGCCAAAAGGTATTATACATACTTCTTCACCAGAAAACCCAAATGGCCTCAGCAACTCTTACCCTTCTTCCTCAATGGGAATGGGACTCTATGCTGACATGGGTTCTCTTTCTCTTAGCTCCAACTACGCTgctgtttcttcttctcaagAGAGTTATGCCTGCAAGAGCTTTGACATGAATCAGAATGGGAGCACAAGCTGGACTTTTCCATTTATGAGGGATAGCCTTGGTAGAAACTTTGAGGAACAGCCCAATAGTGATGTTTTGGAAGGGAAAGCTTCTGATTGCAGTGATGGGGTTGGggaaaataatgagaaaatgaaCCATAGTGGAAGCCATAATGAAGAGAACCCTAATGAGAATTCTGCGGCCAGTGGTAGCAAAGAGGCAGATACTGGCCAGTCCAAACTCTGTGCCAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTAAAGGAACTAGTGGCCCTTTATGGGCCTCAGAACTGGAACCTTATAGCAGAGAAGTTAGAAGGAAGATCAGGCAAGAGCTGTAGGCTGAGATGGTTTAACCAGCTGGATCCAAGGATCAATAGGAGAGCTTTTactgaagaagaggaagagagactAATGCAGGCACATAGAATATATGGCAACAAATGGGCCATAATTGCTAGGCTCTTCCCTGGAAGAACTGATAATGCTGTCAAGAATCATTGGCATGTCATAATGGCTAGAAAGTACAGAGAACAATCTAATGCTTACAGGAGGAGGAAGCTAAGCCAATCTGTTTACAGAAGAATGGAGGAAAATCCGAGTTTTGTCTGCAGAGACGCAACCACTGCAGGGACAGAACCACCACCATATGTTCTCAATCTCCCTAACGGAGGATTCAGCAATATGGTTAACAATTTCCCATATGGATCTTTCCATGGAGCAGCAGTAGGTGGTGGGGTTGATTATGGCTTAAATGGTTCACCCCACATGACTGGCGGAAGAGAAGCAATCTCAAGCAACAAGCAGGCCCCTCCTCATTCTGGTCTTGATTACCTCTCTGGTGCTAGAAGCAATGACATGATGTATACGGGTGGGGTTTTGGGCCAGAGTAGATACTGGGACAGGACAAGTGATGATCATAAACATCATACAGCAGGTTTCTATCCTCATGGGTTTTATCCCCCATACATGATGCCAATGCAACAGTCAAACTCAAACAGTCACAATTTTTACAGTTTGTCATCAAATTCCACAGTAGGAGCTGCCCACGTTTTGGCCAGTGAAGGTTCGTCATCCATGGCAGAGAACAGAGATCAAGTCAGTCACCACCACCATCACCACCACAACCCTGACCCCGTTCCACCTCCATTTATTGATTTTCTCGGGGTTGGAGCCACCTG 1388 0.4409 MKAWPKGIIHTSSPENPNGLSNSYPSSSMGMGLYADMGSLSLSSNYAAVSSSQESYACKSFDMNQNGSTSWTFPFMRDSLGRNFEEQPNSDVLEGKASDCSDGVGENNEKMNHSGSHNEENPNENSAASGSKEADTGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAIIARLFPGRTDNAVKNHWHVIMARKYREQSNAYRRRKLSQSVYRRMEENPSFVCRDATTAGTEPPPYVLNLPNGGFSNMVNNFPYGSFHGAAVGGGVDYGLNGSPHMTGGREAISSNKQAPPHSGLDYLSGARSNDMMYTGGVLGQSRYWDRTSDDHKHHTAGFYPHGFYPPYMMPMQQSNSNSHNFYSLSSNSTVGAAHVLASEGSSSMAENRDQVSHHHHHHHNPDPVPPPFIDFLGVGAT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01509 462 Pfam Myb-like DNA-binding domain 196 239 IPR001005 -
Bva08g01509 462 Pfam Myb-like DNA-binding domain 144 190 IPR001005 -
Bva08g01509 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 190 IPR017930 -
Bva08g01509 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 245 IPR017930 -
Bva08g01509 462 CDD SANT 147 188 IPR001005 -
Bva08g01509 462 MobiDBLite consensus disorder prediction 118 136 - -
Bva08g01509 462 CDD SANT 198 238 IPR001005 -
Bva08g01509 462 MobiDBLite consensus disorder prediction 82 139 - -
Bva08g01509 462 MobiDBLite consensus disorder prediction 1 23 - -
Bva08g01509 462 MobiDBLite consensus disorder prediction 422 454 - -
Bva08g01509 462 PANTHER MYB TRANSCRIPTION FACTOR 31 462 - -
Bva08g01509 462 Gene3D - 197 268 - -
Bva08g01509 462 ProSiteProfiles Myb-like domain profile. 191 241 IPR001005 -
Bva08g01509 462 SUPERFAMILY Homeodomain-like 144 237 IPR009057 -
Bva08g01509 462 SMART sant 195 243 IPR001005 -
Bva08g01509 462 SMART sant 143 192 IPR001005 -
Bva08g01509 462 ProSiteProfiles Myb-like domain profile. 144 190 IPR001005 -
Bva08g01509 462 PANTHER MYB PROTEIN-RELATED 31 462 - -
Bva08g01509 462 Gene3D - 144 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01509 Bva-Chr8 7937450 7939695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01509 116 269 MYB Transcription Factor Family AT1G69560 72.393 1.03e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva08g01509 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01509 K09422 - vvi:100253313 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01509 08 7937450 7939695 Bva08g01509 08 7937450 7939695 ECH