Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01502 atGGCTTCTGAAGCTGAGGTGTCTGAGATTTCCTCAGTGTTCGAGAGGATGGTGAGGAACAGAGACATGTCTCTGTTCCTACCCTTCTTCTTTGGCTTCTCTAATGCTTCGCCCAGAAGAGATGGTCAAGACCCTGATCAGGAAACTGAGAGTACTGAAACTCCCCAGCGTGAAAGAATCATCTTGATAAACCCATTCACCCAAGGCATGGTTGTGATTGATGGCGCTTCAAGCCTTGAGGCTCTGTTTCGTGAACTGGGGAGCAAGGGTGGGCAACCTCCAGCTTCCAAGGAATCCATAGATGACATGCCGAGTGTTGAGATTGGTGAAGGTGAAGATGGGGAGTGTGTTATTTGTTTGGAGGAGTGGGAGGCTGGTGGTGTGGCAAAAGAGATGCCTTGTAAGCATAAATTTCACCCCGATTGTATTGTGAAATGGTTGGGCATTCATGGGTCTTGCCCAGTTTGCAGGTACCAGATGCCTGTGGATGAGAAAGATGAGGGCAAGAAGAGAGATGAAGAAGGGGGAGAGAGAAGGAGGGGTGACAGAGAAGTGTGGGTTAGTTTCTCTTTCAATGGTAGTAGGAGAACTGAGGATTCAAATCAAGCTCCTTCAGCTGATTCCAATGTTTCTCCATTGAGCCCAAGAGGTGATCCTGATGTGGAAAGtta 671 0.4799 MASEAEVSEISSVFERMVRNRDMSLFLPFFFGFSNASPRRDGQDPDQETESTETPQRERIILINPFTQGMVVIDGASSLEALFRELGSKGGQPPASKESIDDMPSVEIGEGEDGECVICLEEWEAGGVAKEMPCKHKFHPDCIVKWLGIHGSCPVCRYQMPVDEKDEGKKRDEEGGERRRGDREVWVSFSFNGSRRTEDSNQAPSADSNVSPLSPRGDPDVES 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01502 223 PANTHER - 9 169 - -
Bva08g01502 223 MobiDBLite consensus disorder prediction 87 107 - -
Bva08g01502 223 MobiDBLite consensus disorder prediction 41 55 - -
Bva08g01502 223 MobiDBLite consensus disorder prediction 164 185 - -
Bva08g01502 223 Pfam Ring finger domain 115 157 IPR001841 -
Bva08g01502 223 SMART ring_2 116 156 IPR001841 -
Bva08g01502 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 163 IPR013083 -
Bva08g01502 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 169 - -
Bva08g01502 223 SUPERFAMILY RING/U-box 107 162 - -
Bva08g01502 223 MobiDBLite consensus disorder prediction 164 223 - -
Bva08g01502 223 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
Bva08g01502 223 MobiDBLite consensus disorder prediction 37 57 - -
Bva08g01502 223 MobiDBLite consensus disorder prediction 190 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01502 Bva-Chr8 7896496 7897388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01502 1 209 C3H Transcription Factor Family AT1G26800 51.869 3.18e-67 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01502 - - tcc:18610387 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01502 08 7896496 7897388 Bva08g01502 08 7896496 7897388 ECH