Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01494 ATGAGCGATCATTTGGTGTTGTATGTGGACCGTCTTGTACGGCCTTTGCCCGTTGAATCGGTGACCCAAGTGGCTGAGGTGCCTTCGGCGCCGGCTGCAAGTGGTGGGTCCGTGGATGCCGCTGGGCCGTCTGGTTCAGCACCTCCGGCTGATGATGCTCGCTCGGAGCATGGTGAGGATGATGAGGACGACGCGCTGATCCAGTCTGCAGAATGTCGCATTTGCCAAGAGGAGGACAGCATTAAGAATTTGGAGACGCCTTGTGCCTGCAGCGGCAGTCTAAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGTGAAATATGTCATCAGCCTTATCAACCTGGTTATACTGCCCCACCTCCTCGTCCTCATCCCGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAGTCTCTGGCACACCATTGGACTTGCGTGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAGTTCTTGGAAGCTGAATATGACGAGTATGCTGCATCTAATGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTGATTTTAATGGCCCTTTTGCTCTTGCGGCATGCACTGTCCGTCACAGATGCTGATGCTGATGATGATCCATCAACATTTTTCTCTCTTTTCTTACTTCGAGCAGCTGGATTTCTTTTACCTTGTTATATCATGGCTTGGGCAATCAGTATTTTGCAACGACGGCGGCAAAGACAGGAGGCGGCAGCACTGGCGGCGACTCAAGTGGCATTTGTTCTGCAATCTGGGCAGCGTAGGGGTCTGCAATTTGCGATAGCACCAGGGCCACCAACAGTGAATACACACCAGGAGGTGGAACGTGTTTA 881 0.5187 MSDHLVLYVDRLVRPLPVESVTQVAEVPSAPAASGGSVDAAGPSGSAPPADDARSEHGEDDEDDALIQSAECRICQEEDSIKNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPHPEETTIDIGGGWTVSGTPLDLRDPRLLAIAEAERQFLEAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDADADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPPTVNTHQEVERV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01494 293 CDD RING_CH-C4HC3_MARCH 72 118 - -
Bva08g01494 293 Coils Coil 160 180 - -
Bva08g01494 293 Pfam Protein of unknown function (DUF3675) 123 241 IPR022143 -
Bva08g01494 293 MobiDBLite consensus disorder prediction 27 63 - -
Bva08g01494 293 Pfam RING-variant domain 72 117 IPR011016 GO:0008270
Bva08g01494 293 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 284 IPR033275 -
Bva08g01494 293 SMART ringv_2 71 118 IPR011016 GO:0008270
Bva08g01494 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 284 - -
Bva08g01494 293 SUPERFAMILY RING/U-box 69 122 - -
Bva08g01494 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 127 IPR013083 -
Bva08g01494 293 ProSiteProfiles Zinc finger RING-CH-type profile. 64 124 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01494 Bva-Chr8 7858382 7861180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01494 60 118 C3H Transcription Factor Family AT2G37950 40.323 1.98e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01494 - - ahf:112734090 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01494 08 7858382 7861180 Bva08g01494 08 7858382 7861180 ECH