Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01491 ATGGACTTGACCCCAAGCACCACCCACACCTTAGATACAGATACTCAAACCCCACCACCGACCCATCTCACCAACACCACCAATTCTTTGTCTTTCACCAACGGTTCCCTCAAGCGCCATCACCATTTAGCCCCACCACCGTCACAGCCGCCACATATGGTGGTTTCCTACAAGGAATGCCTCAAGAACCACGCCGCCACCATAGGTGGCCACGCCCTTGACGGCTGCGGTGAGTTCATGCCTTCGCCCACTTCCAACCCCAGCGACCCTCGCTCCTTAAAGTGCGCCGCTTGTGGCTGCCACCGCAACTTCCATCGCCGTGACCCACAAGAATTCGCTAGCCCCAATTTTCTCAACTGTTTCTACTCGCCGGCAGCTGCAGTCCCGCCACCGCCACTTCAACCGCACCGGGGGTTAAGCCCTAGTACGAGTCCGAGCATGAGCACAAGCCCGAGTCCAAGTCCAAGCCCCATTTCTAGTCCTTCACCGCCACCGGTTTCGCATTTTCCACCTTCGTTTCATGCATCGGCACCCCACGTGCTGTTAGCGCTGGGCACCGCGTATTCTGGGCCATCCGAGGAGCAGCATCGGAATTTCAATTCCACGGTGATGAATACGGAAAACCCAAGTGGGAAAAAGAGGCACAGAACGAAATTTAGCCATGAGCAGAAGGAGAAGATGTATTTGTTTTCTGAGCAATTGGGGTGGAAAATGCAGAAAGGGGATGACAGATTGGTGCAGGATTTCTGCAATGAGCTGGGTATTTCAAGAGGGGTGTTCAAGGTTTGGATGCACAACAACAAACACACTTTCAGGAAGAGATCAGAAACGGGTAATGCTCCTCTGAATGAGAAAATCAATGAGGAGGAGGATAATGATAATGGCAATGGCAATGGCACTGGTAGTGGTGGCTTTGATGGTGATATTAACAATCCTCAAAACAACACAAATAGCAGCAACAATGACATCCACAGAAATGAAGGTAGCTCTGTGAATCTTCATGTTTCTGTTAATGGGTCTTCTTCTTA 1028 0.5107 MDLTPSTTHTLDTDTQTPPPTHLTNTTNSLSFTNGSLKRHHHLAPPPSQPPHMVVSYKECLKNHAATIGGHALDGCGEFMPSPTSNPSDPRSLKCAACGCHRNFHRRDPQEFASPNFLNCFYSPAAAVPPPPLQPHRGLSPSTSPSMSTSPSPSPSPISSPSPPPVSHFPPSFHASAPHVLLALGTAYSGPSEEQHRNFNSTVMNTENPSGKKRHRTKFSHEQKEKMYLFSEQLGWKMQKGDDRLVQDFCNELGISRGVFKVWMHNNKHTFRKRSETGNAPLNEKINEEEDNDNGNGNGTGSGGFDGDINNPQNNTNSSNNDIHRNEGSSVNLHVSVNGSSS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01491 342 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 212 268 IPR006455 -
Bva08g01491 342 MobiDBLite consensus disorder prediction 274 342 - -
Bva08g01491 342 SUPERFAMILY Homeodomain-like 206 273 IPR009057 -
Bva08g01491 342 MobiDBLite consensus disorder prediction 131 171 - -
Bva08g01491 342 Pfam ZF-HD protein dimerisation region 55 109 IPR006456 -
Bva08g01491 342 PANTHER FACTOR, PUTATIVE-RELATED 1 304 - -
Bva08g01491 342 MobiDBLite consensus disorder prediction 1 51 - -
Bva08g01491 342 MobiDBLite consensus disorder prediction 293 342 - -
Bva08g01491 342 MobiDBLite consensus disorder prediction 1 36 - -
Bva08g01491 342 MobiDBLite consensus disorder prediction 274 292 - -
Bva08g01491 342 Gene3D - 199 273 - -
Bva08g01491 342 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 57 108 IPR006456 -
Bva08g01491 342 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 108 IPR006456 -
Bva08g01491 342 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 304 - -
Bva08g01491 342 MobiDBLite consensus disorder prediction 148 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01491 Bva-Chr8 7843817 7845300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01491 53 290 ZF-HD Transcription Factor Family AT1G69600 48.971 3.17e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Bva08g01491 ZF-HD_dimer 6.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01491 - - vra:106766949 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01491 08 7843817 7845300 Bva08g01491 08 7843817 7845300 ECH