Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01472 ATggaagcagcagcagcagatCATCAAAATGGAACCCCAAGACCCAATTTTCCCTTGCAGCtattagagaaaaaacaaCCATGTTCTACTTCCAATTCACCTCATACAAACACCACGGCCGAAACCTGCTCCGACCCGACCCCACTTGTATCGGAACAACCCAAGAAACACCCTCCCAAGCGGACCTCCACCAAGGACAGGCACACCAAAGTGGATGGCCGCGGTCGCAGGATCCGCATGCCTGCCGCGTGCGCCGCCAGAGTCTTCCAGCTGACTAGAGAGCTCGGCCACAAGTCCGATGGCGAAACCATCCAGTGGCTGCTCCAACAAGCCGAGCCTGCGGTGATAGCCGCCACCGGCACGGGCACCATTCCCGCGAATTTCACTTCTCTCAACATCTCGCTCCGTAGCTCTGGTTCCTCCATGTCCGCGCCGTCGCACTATTTCCGAAACAGTTACTTCAATCCGAACTTCTCGGCGGTGAACCAGCTACGGACACGCGGCGAGTGGGAGCGGAGCTTGGTCATGGAAGATTCTAGAAGGATCCTCTTCCCCGGTGCTGTTAGGGAGAATTCCTCTATGTTGAATTTCAATTCCGCGAATAATGTGAATGCCATTCTCCAAGCAAAGCCAGAGCTGCGTGAAGAAGCCGGCGGCGGAGGTAACAACAACTGCAACGGCAGCGGCCTCGAATTGTCGACGAGTACGACGTCAGATTCCGACACCAGTatgggaagaaagagaaaaccgGAGCAAGAGCTGTCACAAAGTCAGATGGGAAGTTATTTGCTACAATCCAGTTCAGGTTCAATTACGGCGAGCCATAGTTCAACTCCGGCGACGTTTTTTATGGTAACAAGCCCCGCTAACAGTGGGATGACAGGTGGCACTGGTGGTAATAATGTTGATCCCATTTGGGCAATTCCGTCCGTTGGAAATAATAACACGTATAGAAGTGCTTTATCTGGTGGGATACATTTGATGAATTTCGCATCTCCAATGTCTCTCATGCCAGGGCAGCAATTAGGTTCAGTAACTGAAAGCAACTTAGGCATGCTTGCAGCACTGAATGCTTATAGGCAAATTCCGGCCAATGGCCTGGTGGACTCTCCGGGCACCGCCGGGCATCACGGAGGAGATGTAGGACACGAAACACCTAGATG 1163 0.5056 MEAAAADHQNGTPRPNFPLQLLEKKQPCSTSNSPHTNTTAETCSDPTPLVSEQPKKHPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIQWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSAPSHYFRNSYFNPNFSAVNQLRTRGEWERSLVMEDSRRILFPGAVRENSSMLNFNSANNVNAILQAKPELREEAGGGGNNNCNGSGLELSTSTTSDSDTSMGRKRKPEQELSQSQMGSYLLQSSSGSITASHSSTPATFFMVTSPANSGMTGGTGGNNVDPIWAIPSVGNNNTYRSALSGGIHLMNFASPMSLMPGQQLGSVTESNLGMLAALNAYRQIPANGLVDSPGTAGHHGGDVGHETPR 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01472 387 ProSiteProfiles TCP domain profile. 64 118 IPR017887 -
Bva08g01472 387 MobiDBLite consensus disorder prediction 54 71 - -
Bva08g01472 387 Pfam TCP family transcription factor 62 259 IPR017887 -
Bva08g01472 387 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 25 384 - -
Bva08g01472 387 MobiDBLite consensus disorder prediction 254 270 - -
Bva08g01472 387 MobiDBLite consensus disorder prediction 23 49 - -
Bva08g01472 387 MobiDBLite consensus disorder prediction 215 270 - -
Bva08g01472 387 MobiDBLite consensus disorder prediction 368 387 - -
Bva08g01472 387 MobiDBLite consensus disorder prediction 1 71 - -
Bva08g01472 387 MobiDBLite consensus disorder prediction 221 241 - -
Bva08g01472 387 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 25 384 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01472 Bva-Chr8 7761775 7763335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01472 252 366 TCP Transcription Factor Family AT1G69690 33.824 3.08e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Bva08g01472 TCP 3.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01472 - - gmx:100809966 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01472 08 7761775 7763335 Bva11g01006 11 11756920 11758560 BWGD
Bva08g01472 08 7761775 7763335 Bva08g01472 08 7761775 7763335 ECH