Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01470 ATGGCTGATCCTCAAAGGACGGGTGTCGGCGAGAGGGATATCGAGCAGGCTATTACTTATCTTAAAAAAGGTGCGTATCTGCTAAAGTATGGACGCAGAGGGAAGCCAAAGTTCTGCCCATTTAGGCTTTCCAATGACGAGTCTCTACTTTTATGGTACTCTGGGAAGGACGAGAAACAGCTTAAGCTCAGTACTGTCTCGAAGATTATTCCTGGACAGCGAACTTCAACATTTCAGCGGTATCCTCGGCCTGAAAAGGAGTATCAatcattttctcttatatataatgataggTCCTTGGACTTGATATGTAAGGACAAGGACGAAGCAGAAATTTGGTTTGTTGGTCTTAAGGCATTAGTTACTCGGGGTAACGCTCGTAAGTGGAGACATGACGCAATTTCTGATAGTTCACAATCTCGCTCTCGAAGAACTACTCCATCAATTACACCATATGATCCAGGAGATGTTGAAGGAGCTCCTTTTGACACTTCTTCGCAAAATAGAATGGGAAGAGCTTTTTctgaaataatttcattcaCTGCAACTGGCAAGCCTTCCTGTCAAGCAGAATCAATTGCAAATTCACCTTCATCATCTGGGTCTGTGGAGAATTCAAATAATCGAAACTCTGCAGCTGAGGCAATTCGAGTTAGTTTATCAAGTGCTGTAAGTTCATCCAGTCAGGGCTCTTTCCATGAAGATTTTGATGGCTTAGGCGATATTTTCATCTGGGGAGAAGGTATCAGAGAAGGAATGCTTGGTGGTGGTGTGCATAGAGTTGGAACCTTATCTAGCTCTCTTACGGATGCATTTCTCCCTAAGGCATTGGAATCAAAAGTAGTTCTAGATGTTCAAAGTATTGCCTGTGGTTACAAGCATGCTGTTGTAGTCACCAAGCAAGGAGAGATATTTAGTTGGGGCGAGGAGTCTGGAGGTAGGCTTGGGCATGGTGTAGAAGCAGATCTTTCCCACCCTAAGCTCATTGACACTCTTAGTGGCATGAATATTGAGTTAGTAGCATGTGGGGAATATCATACTTGTGCTGTTACATTTTCTGGTGATCTTTATACGTGGGGTGATGGTACACACAATTCTGGTTTACTTGGGCATGGAACTGAAGCCAGTCATTGGATTCCTAAGAAGGTAAGTGGTAACTTGGAGAGTGTACGTTTATCATATGTATCATGTGGACCTTGGCACACAGCCATTGTGACATCAGCTGGTCAGTTATTTACATTTGGGGATGGATCTTTTGGTGCTTTAGGCCATGGAGATCATAGTAGCACAAATATTCCTCGTGAAGTAGAAACTTTGAAAGGGTTGAAAACAACAAAGGTTTCTTGTGGTGTTTGGCATACGGCTGCAGTTGTTGAGGTGATAAATGAATCTGTGGAATCTTCTGGAGGCTCTCCTATTGGGAAACTATTCACATGGGGTGATGGAGATAAAGACCGACTAGGACATGGTGATAAGGAACCTAGACTAGTTCCTGAATGTGTAATTGCTCTggataatgaaaatatttgtcaaGTGGCTTGTGGCCACAATCTTACAATTTCTTTGACAACCTCGGGACATGTATATACAATGGGCAGCAGTGCTTATGGACAACTTGGCAATCCTGCAGCAGATGGAAATGTTCCTACACGCGTTAAAGGTAAAATTGCTGGCAGTTTTATAGAAGATATTGCTTGTGGTTCTTACCATGTTGCCATCCTGACTGCCAAGTCAGAGGTTTACACCTGGGGGAAGGGTTCAAACGGGCAGTTAGGTCATGGAGACATTGATCACAGAAATACACCCACACTAGTTGAAACTCTAAAAGATAAGCAAGTGAAGAGTGTTGTTTGTGGATCAAACTTTACTGCTGTTGTATGCCTTCATAAATGGGTATCGGGTGCTGACCATTCTGTGTGCTCTGGTTGTCATAATCCATTTGGATTCAGAAGAAAGCGCCATAACTGTTACAACTGTGGACTAGTCTTTTGCAAAGCATGCAGCAGTAAAAAATCTACTAAAGCTTCACTTGCTCCTAGTGCCAACAGGCCATACCGTGTTTGTGATGATTGTTACTCTAGACTTAAGAAAGTGGCAGAATCCATTTCCTTGGGGCAAACTCTCACCTCAAAAGGTGGAAGTACAAATGACTTGAAGGCTACCAAATTACAGGGAACACTATCAAGGCTGTCATCTTTTGGTTCTATCCTTCAAGGAGAAAGTAGACAGGCAAAGCCTCCAGAATCACATGGCAGCCACATTTTTCCAGCATTGAATGGAAAATTACAGTTGGTCAGTTTCACTCCTTCAAAAGCATCAAATTCTCTTGCTGGAGCACCATCAAGGAAGCACCTTTCAACTTCCGAGCCTTCTGCCAGATTAGTTTCTCAAGCATCATCTCCTGTTTCATCAAAGTCCAGTCCGCGGAAGTCTTATGAAGATATCCATGATGAGTCTAAGCAAAGAAATGAGATTCTAAAACAAGAAGTTACAAGTTTAAGGATACAGGTTGAGGATCTTACTCTTAAATCCAAAAGAATTGAGGCTGAACTTGAAAGGACAACAAAGCAATTGAAAGAAGTCAGTGCGGTAGCTGCAGAGGAAGCAGAAAAATGTAGATCTGCCAAAGAGGTGATAAAGTCATTGACTTCTCAGTTGAAGGAAATTGTGCACAAACTGCCTGATGGGCATAATCCCAACTCCAGTGCGGAATTTGACATTGGAACCAGGATTCAAAACCAGTCCTTAGATGAGAACCATATAACGAACATAGTCACTCCTGAAGTTGGGTCAGACAGCAATGCAGCAAACCAAATATTGCCTAATGGTACCAAAACACCTAGTGGAAAATCAGAGTGGGTGGTGCAAGATGAACCTGGTGTATACATAAGTTTGGCCTCCCTGCCAGGTGGTGTTAACGAACTTAAACGTGTCCGATTCAGTCGGAGACATTTCACAGAAGAACAAGCTGAGAAGTGGTGGGCTGAAAATGGAACCAAAGTATTGGAGCGGCACAATATAGTTGCTTTGTA 3032 0.4215 MADPQRTGVGERDIEQAITYLKKGAYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKDEKQLKLSTVSKIIPGQRTSTFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFVGLKALVTRGNARKWRHDAISDSSQSRSRRTTPSITPYDPGDVEGAPFDTSSQNRMGRAFSEIISFTATGKPSCQAESIANSPSSSGSVENSNNRNSAAEAIRVSLSSAVSSSSQGSFHEDFDGLGDIFIWGEGIREGMLGGGVHRVGTLSSSLTDAFLPKALESKVVLDVQSIACGYKHAVVVTKQGEIFSWGEESGGRLGHGVEADLSHPKLIDTLSGMNIELVACGEYHTCAVTFSGDLYTWGDGTHNSGLLGHGTEASHWIPKKVSGNLESVRLSYVSCGPWHTAIVTSAGQLFTFGDGSFGALGHGDHSSTNIPREVETLKGLKTTKVSCGVWHTAAVVEVINESVESSGGSPIGKLFTWGDGDKDRLGHGDKEPRLVPECVIALDNENICQVACGHNLTISLTTSGHVYTMGSSAYGQLGNPAADGNVPTRVKGKIAGSFIEDIACGSYHVAILTAKSEVYTWGKGSNGQLGHGDIDHRNTPTLVETLKDKQVKSVVCGSNFTAVVCLHKWVSGADHSVCSGCHNPFGFRRKRHNCYNCGLVFCKACSSKKSTKASLAPSANRPYRVCDDCYSRLKKVAESISLGQTLTSKGGSTNDLKATKLQGTLSRLSSFGSILQGESRQAKPPESHGSHIFPALNGKLQLVSFTPSKASNSLAGAPSRKHLSTSEPSARLVSQASSPVSSKSSPRKSYEDIHDESKQRNEILKQEVTSLRIQVEDLTLKSKRIEAELERTTKQLKEVSAVAAEEAEKCRSAKEVIKSLTSQLKEIVHKLPDGHNPNSSAEFDIGTRIQNQSLDENHITNIVTPEVGSDSNAANQILPNGTKTPSGKSEWVVQDEPGVYISLASLPGGVNELKRVRFSRRHFTEEQAEKWWAENGTKVLERHNIVAL 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01470 1010 MobiDBLite consensus disorder prediction 772 820 - -
Bva08g01470 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 354 408 IPR000408 -
Bva08g01470 1010 Pfam Transcription factor BRX N-terminal domain 867 895 IPR027988 -
Bva08g01470 1010 Pfam Transcription factor regulating root and shoot growth via Pin3 950 1005 IPR013591 -
Bva08g01470 1010 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 634 696 IPR017455 -
Bva08g01470 1010 CDD PH_PLC_plant-like 12 122 - -
Bva08g01470 1010 Gene3D - 186 364 IPR009091 -
Bva08g01470 1010 Gene3D - 365 469 IPR009091 -
Bva08g01470 1010 MobiDBLite consensus disorder prediction 131 167 - -
Bva08g01470 1010 SMART fyve_4 628 697 IPR000306 GO:0046872
Bva08g01470 1010 Pfam FYVE zinc finger 630 696 IPR000306 GO:0046872
Bva08g01470 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 578 629 IPR000408 -
Bva08g01470 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 240 301 IPR000408 -
Bva08g01470 1010 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 447 457 IPR000408 -
Bva08g01470 1010 Gene3D - 13 128 IPR011993 -
Bva08g01470 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 474 525 IPR000408 -
Bva08g01470 1010 SUPERFAMILY FYVE/PHD zinc finger 630 702 IPR011011 -
Bva08g01470 1010 MobiDBLite consensus disorder prediction 189 210 - -
Bva08g01470 1010 Coils Coil 809 871 - -
Bva08g01470 1010 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 288 298 IPR000408 -
Bva08g01470 1010 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 702 IPR013083 -
Bva08g01470 1010 Pfam Pleckstrin homology domain 15 121 IPR001849 -
Bva08g01470 1010 ProSiteProfiles BRX domain profile. 951 1006 IPR013591 -
Bva08g01470 1010 PRINTS Chromosome condensation regulator RCC1 signature 395 411 IPR000408 -
Bva08g01470 1010 PRINTS Chromosome condensation regulator RCC1 signature 285 298 IPR000408 -
Bva08g01470 1010 PRINTS Chromosome condensation regulator RCC1 signature 573 594 IPR000408 -
Bva08g01470 1010 PRINTS Chromosome condensation regulator RCC1 signature 411 425 IPR000408 -
Bva08g01470 1010 PRINTS Chromosome condensation regulator RCC1 signature 304 320 IPR000408 -
Bva08g01470 1010 PRINTS Chromosome condensation regulator RCC1 signature 515 533 IPR000408 -
Bva08g01470 1010 PRINTS Chromosome condensation regulator RCC1 signature 354 370 IPR000408 -
Bva08g01470 1010 SUPERFAMILY PH domain-like 13 121 - -
Bva08g01470 1010 MobiDBLite consensus disorder prediction 927 951 - -
Bva08g01470 1010 CDD FYVE_like_SF 640 692 - -
Bva08g01470 1010 MobiDBLite consensus disorder prediction 772 808 - -
Bva08g01470 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 474 520 IPR000408 -
Bva08g01470 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 353 404 IPR000408 -
Bva08g01470 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 525 573 IPR000408 -
Bva08g01470 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 409 457 IPR000408 -
Bva08g01470 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 579 626 IPR000408 -
Bva08g01470 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 302 350 IPR000408 -
Bva08g01470 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 302 353 IPR000408 -
Bva08g01470 1010 SUPERFAMILY RCC1/BLIP-II 239 631 IPR009091 -
Bva08g01470 1010 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1004 - -
Bva08g01470 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 526 577 IPR000408 -
Bva08g01470 1010 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1004 - -
Bva08g01470 1010 Gene3D - 470 643 IPR009091 -
Bva08g01470 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 409 460 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01470 Bva-Chr8 7747303 7755403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01470 949 1007 Major Intrinsic Protein MIP AT1G31880 54.237 1.56e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01470 - - lang:109355968 1356.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01470 08 7747303 7755403 Bva08g01470 08 7747303 7755403 ECH