Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01465 ATGTCCAGCAGAAGATCCCGTTCGAGACAATCGGGTGTTTCCAGCAGTGAGATCACTGATGCTCAGATCATCGATCTCGTCTCCAAGTTGCAGCAACTTATCCCTGAGCTTCGCACTAGGCGCTCCGACaagGTTTCGGCTGCCAAGGTGTTGCAGGAGACTTGCAACTACATTAAGAACTTGCATAGAGAAGTTGATGATCTGAGTGACCGATTATCTCAACTTTTGGCCAACACAGACTCCGACAGCGCTCAAGCAGCCATTATTAGGAGCTTACTTATGTA 284 0.4789 MSSRRSRSRQSGVSSSEITDAQIIDLVSKLQQLIPELRTRRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSQLLANTDSDSAQAAIIRSLLM 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01465 94 CDD bHLH_AtPRE_like 18 78 - -
Bva08g01465 94 PANTHER TRANSCRIPTION FACTOR PRE6 1 94 - -
Bva08g01465 94 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 80 IPR036638 GO:0046983
Bva08g01465 94 PANTHER TRANSCRIPTION FACTOR PRE 1 94 IPR044293 GO:0006355|GO:0040008|GO:0046983
Bva08g01465 94 Coils Coil 58 78 - -
Bva08g01465 94 Gene3D - 21 90 IPR036638 GO:0046983
Bva08g01465 94 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 61 IPR011598 GO:0046983
Bva08g01465 94 Pfam Helix-loop-helix DNA-binding domain 25 61 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01465 Bva-Chr8 7699027 7699588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01465 1 94 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 69.474 9.09e-36 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva08g01465 HLH 3.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01465 - - gmx:100804830 149.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01465 08 7699027 7699588 Bva08g01465 08 7699027 7699588 ECH
Bva08g01465 08 7699027 7699588 Bva06g01242 06 9564405 9565147 ECH
Bva08g01465 08 7699027 7699588 Bva05g00459 05 2264609 2264994 ECH