Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01449 ATGTTGCAGCTACACAtgccatcttcttcttcttcccctgTCACTGCAAAATACTGCATCAAAATCTGCCCTAACGACTGTTTCTCTTCAAAGTTCTTATCTTTAAGCGGCGCTTCTAAGCCAAGTTCCTCAAGCTTCTCTCTGACCCGACCATCCTTCGGCACCAGGAGACTCGTTATCAAATGCCGCCAATCCGGGTTCTTCGACCAGAAAAGCTTCTCTACTAGAGCTGATTCCGAAGACCCTTCGCATTCCCCGCGGCATCCCCCAGCTCCAAGAGgtggaagaggaagagaggaagTTGGTGCTTTGCCGCCAAGGGTTTTTGTGGGTCACTCGATATACAAAGGGAAGGCTGCTCTTACAGTGACTCCTAGACCTCCAGAATTCACTCCATTGGATTCAGGGGCATTCAAAGTATCTAGGGAAGGTTGTATGCTGCTTCAGTTTGCTCCTGCAGTTGGTATGCGCCAGTACGACTGGAATAGAAAGCAGGTATTCTCTCTATCAATCAGTGAAATGGGAAGTGTTATTAGCCTTGGTGCGAGGGATTCTTGTGAATTCTTCCATGATCCTCTTAAAGGGAAAAGTGATGAAGGTAAAGTCCGAAAAGTTTTGAAGGTGGAGCCACTTACTGATGGTTCTGGTCACTTGTTTAACCTCAGTGTTCAAAACAAGCTTGTGAACGTGGATGAAAACATCTATATCCCAGTTACAAAATCAGAGTTGGCagttttgaattcaattttcaatTTTATCATACCCTACCTTCTAGGTTGGCATGCCTTTGCAAATTCCATAAAACCAGAAGATCTCGACCAAACGAATAAAGCCAACCCAAGATATGGAGGAGACTATGAATGGAGCAGATA 872 0.4197 MLQLHMPSSSSSPVTAKYCIKICPNDCFSSKFLSLSGASKPSSSSFSLTRPSFGTRRLVIKCRQSGFFDQKSFSTRADSEDPSHSPRHPPAPRGGRGREEVGALPPRVFVGHSIYKGKAALTVTPRPPEFTPLDSGAFKVSREGCMLLQFAPAVGMRQYDWNRKQVFSLSISEMGSVISLGARDSCEFFHDPLKGKSDEGKVRKVLKVEPLTDGSGHLFNLSVQNKLVNVDENIYIPVTKSELAVLNSIFNFIIPYLLGWHAFANSIKPEDLDQTNKANPRYGGDYEWSR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01449 290 MobiDBLite consensus disorder prediction 74 95 - -
Bva08g01449 290 Pfam Whirly transcription factor 114 248 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bva08g01449 290 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 35 290 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bva08g01449 290 SUPERFAMILY ssDNA-binding transcriptional regulator domain 106 290 IPR009044 GO:0003677|GO:0006355
Bva08g01449 290 Gene3D Transcriptional Coactivator Pc4; Chain A 99 273 IPR009044 GO:0003677|GO:0006355
Bva08g01449 290 MobiDBLite consensus disorder prediction 73 101 - -
Bva08g01449 290 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 35 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01449 Bva-Chr8 7585307 7588205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01449 50 290 Whirly Transcription Factor Family AT1G14410 62.810 3.49e-111 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Bva08g01449 Whirly 2.5e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01449 - - gmx:100789252 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01449 08 7585307 7588205 Bva08g01449 08 7585307 7588205 ECH