Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01444 atggTTGCAAAAATTAGCATTACCTTGCTAATTGCTTTCTTATTCTTGTCCTGTTTGGTTGCCAACCTGCATGCCAATGAGTTAGAAACCGAGGAATTTCGGAAAGAGCAAGCTCAATCATTTGACGTGTATTGGAAGGAAAAAGCAAAGAATGCTGAAGAGGTCAACAAAAGAGCTGCTGTTACAGACCCTTATGAAGTTACTGCTAACCTCTCCTCTAATATTAACGAGATCCTGAGAGGTAGCAAGACGAGAAATGAGAGGATGTTGTCGAGGGGGAAGAAATCTAACGGTCCATGCCAGGCCTTCAACCCCATTGACAAATGCTGGAGATGTAACCCCAACTGGGCGGCCAACCGGCAAAGACTTGCAGATTGCGCAGTGGGTTTCGGCCGGACAACCACCGGCGGCAAGGGTGGACGAATCTATGTTGTCACTGATTCCTCAGATAATGATTTGGCAAATCCCAAACCTGGGACCCTTCGCCACGCAGTTATCCAAACTGAGCCATTATGGATCATCTTTGCTACCAGCATGGTGATTAGGCTCAGCGAGGAGCTGATAGTGACTTCTCACAAAACCATTGATGGGAGAGGAGCCAATGTTCACATTGCTCATGGTGCTGGTTTTACCCTGCAGTTCATAGAGAATGTGATCATCCATGGGATTCATATTCATGATATTCATGCTGGCAACGGTGGAATGATTGCAAGTTCTGTTAACCATACTGGTCAAAGGACTAGGAGTGATGGTGATGCAATTTCCATCTTTAGCTCCAGCCGCATTTGGATTGACCATTGCTCATTGTCTAAAGCCACAGATGGATTAATCGATGCAGTTATGGGATCCACTGCTATTACCATCTCCAACAACCAATTCTCAAAACATGATGAGGTCATGCTATTTGGTGCAAGCGATAAGTACGAACAAGACAATATAATGCAAATCACAGTGGCATTCAACAACTTTGGTAAGGGATTAGTCCAAAGGATGCCAAGGTGTAGAAGGGGTTTCTTCCATGTGGTTAATAATTACTACACTCATTGGCAAAAGTATGCCATTGAGGGTAGCAAGAACCCTACTATCATTAGTGAGGGCAACAAGTACATTGCCCCGGacaatatatttcttaaagagGCCGCAGTGAGACTTCTTGCGACAAAGAGCGAGTGGGAACAATGGCAATGGAGATCAATAAACGATGAATTCTTGAATGGTGCATTCTTCACACAATCTGGGTCTGAGTTCATCAAGGAGAAATCAAAATACACTCAGCATATGATCGATGCTCATCCTGTGGCATGGGTGGGTAAACTCACTCGCGATGCCGGCACCCTCTCATGCAAAGTTGGTAAGCCTTGTTA 1364 0.4428 MVAKISITLLIAFLFLSCLVANLHANELETEEFRKEQAQSFDVYWKEKAKNAEEVNKRAAVTDPYEVTANLSSNINEILRGSKTRNERMLSRGKKSNGPCQAFNPIDKCWRCNPNWAANRQRLADCAVGFGRTTTGGKGGRIYVVTDSSDNDLANPKPGTLRHAVIQTEPLWIIFATSMVIRLSEELIVTSHKTIDGRGANVHIAHGAGFTLQFIENVIIHGIHIHDIHAGNGGMIASSVNHTGQRTRSDGDAISIFSSSRIWIDHCSLSKATDGLIDAVMGSTAITISNNQFSKHDEVMLFGASDKYEQDNIMQITVAFNNFGKGLVQRMPRCRRGFFHVVNNYYTHWQKYAIEGSKNPTIISEGNKYIAPDNIFLKEAAVRLLATKSEWEQWQWRSINDEFLNGAFFTQSGSEFIKEKSKYTQHMIDAHPVAWVGKLTRDAGTLSCKVGKPC 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01444 454 SUPERFAMILY Pectin lyase-like 96 446 IPR011050 -
Bva08g01444 454 PRINTS Pollen allergen Amb family signature 126 143 IPR018082 -
Bva08g01444 454 PRINTS Pollen allergen Amb family signature 250 271 IPR018082 -
Bva08g01444 454 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Bva08g01444 454 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Bva08g01444 454 PRINTS Pollen allergen Amb family signature 186 202 IPR018082 -
Bva08g01444 454 PRINTS Pollen allergen Amb family signature 425 448 IPR018082 -
Bva08g01444 454 PRINTS Pollen allergen Amb family signature 150 175 IPR018082 -
Bva08g01444 454 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Bva08g01444 454 SMART amb_all 178 375 IPR002022 -
Bva08g01444 454 Pfam Pectate lyase 187 368 IPR002022 -
Bva08g01444 454 Gene3D - 103 447 IPR012334 -
Bva08g01444 454 Pfam Pectate lyase, N terminus 40 87 IPR007524 GO:0030570
Bva08g01444 454 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Bva08g01444 454 PANTHER PECTATE LYASE 10 454 - -
Bva08g01444 454 PANTHER PECTATE LYASE 18-RELATED 10 454 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01444 Bva-Chr8 7570559 7573604 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01444 5 454 Polysaccharide Lyase AT5G15110 49.585 4.62e-164 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01444 K01728 - gmx:100810857 519.235