Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01443 ATGCAGGCAATTTTAAAGAAGCTGACCTCTCTTTTCGCCTTAGGGTTCTCCAACTTCGTCCAAATTTACCTTTGTGacgTCGCCACCCCACATGGCAGTTTGCTGGAAACTCCAGAGTATTGGGAAGAGCAAAGTAAATCATTTGATGGGTATTGGAAGCAAAGAGCCATAGAAGCTGAAAAGATCAATGCAAAAGCTGCTGTTGTTGACCCTTACGAAGTCACTACCAACATCTCCTCTAGCGTTCAACAgttaaataaaaatttagctGCTGCTTTCAAATGTAGTATCCTAATTGCCAGCGAGGATAAGAGTGGCACGAGAAGGCTGCTAGGTGAAGGAAGACTGTTGAAAGGGAAAAGTAAAGGTCCATGCCAAGCCTTCAACCCCATTGACAAATGCTGGAGATGTGACAGCAACTGGGCTGCCAACCGGCAAAGACTTGTAGATTGCGCAATGGGTTTCGGCCGGACAACCACCGGCGGCAAGGGTGGAAGAATCTATGTTGTCACTGATTCCTCAGATAATGATTTGATGAATCCCAAACCTGGGACCCTTCGCCACGCAGTTATCCAAACTGAGCCATTATGGATCATCTTTGCTACCAGCATGGTGATTAGGCTCAGCGAGGAGCTGATAGTGACTTCTCACAAAACCATTGATGGGAGAGGAGCCAATGTTCACATTGCTCATGGTGCTGGTTTTACCCTGCAGTTCATAGAGAATGTGATCATCCATGGGATTCATATTCATGATATTCATGCTGGCAACGGTGGAACGATTGCAAGTTCTGTTAACCATACTGGTAAAAGGACTAGGAGTGATGGTGATGGAATTAACATCTTTGGTTCTAGCCGTATTTGGATTGATCATTGCTCAATGAGAAGCTGCCAAGATGGACTAATTGATGTCGTTTCTGGATCCACTGCTATTACCATCTCCAACAACCATTTCACACATCATAACGAGgTGATGCTATTTGGCGCTAGTGGGCAAGATACCAGAGACCAAAACATGCAAATCACAGTGGCATTCAACCACTTTGGTAAGAGGTTAACCCAAAGGATGCCAAGGTGCAGATGGGGTTTCATTCATGTGGTTAACAATGATTATACTCAGTGGGAAATGTACGCCATTGGTGGTAGCGATAAACCTACCATCATTAGTGAGGGTAACCGATTCGTTGCCCTTAATAATCCAAATGCTAAACAGGTGACAAAGAGGGAATACGCATATGAGAGTGAGTGGAAAAATTGGCAATGGAGAtcaataaatgatatattccTGAGTGGTGCATATTTCATCCAATCTGGGCCTGAAGTGATTAGGGTAAAATCAGTCTCACAGAATGACTTGATCAGTGCTCATCATGGGACATGGGTGAATAAACTCACACTCTACTCCGGCGCCCTCAAATGCATAATTGGTCGCCCTTGTTA 1439 0.4364 MQAILKKLTSLFALGFSNFVQIYLCDVATPHGSLLETPEYWEEQSKSFDGYWKQRAIEAEKINAKAAVVDPYEVTTNISSSVQQLNKNLAAAFKCSILIASEDKSGTRRLLGEGRLLKGKSKGPCQAFNPIDKCWRCDSNWAANRQRLVDCAMGFGRTTTGGKGGRIYVVTDSSDNDLMNPKPGTLRHAVIQTEPLWIIFATSMVIRLSEELIVTSHKTIDGRGANVHIAHGAGFTLQFIENVIIHGIHIHDIHAGNGGTIASSVNHTGKRTRSDGDGINIFGSSRIWIDHCSMRSCQDGLIDVVSGSTAITISNNHFTHHNEVMLFGASGQDTRDQNMQITVAFNHFGKRLTQRMPRCRWGFIHVVNNDYTQWEMYAIGGSDKPTIISEGNRFVALNNPNAKQVTKREYAYESEWKNWQWRSINDIFLSGAYFIQSGPEVIRVKSVSQNDLISAHHGTWVNKLTLYSGALKCIIGRPC 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01443 479 PANTHER PECTATE LYASE 44 479 - -
Bva08g01443 479 Pfam Pectate lyase, N terminus 47 110 IPR007524 GO:0030570
Bva08g01443 479 SMART amb_all 203 400 IPR002022 -
Bva08g01443 479 Pfam Pectate lyase 212 394 IPR002022 -
Bva08g01443 479 SUPERFAMILY Pectin lyase-like 122 472 IPR011050 -
Bva08g01443 479 Gene3D - 128 472 IPR012334 -
Bva08g01443 479 PRINTS Pollen allergen Amb family signature 151 168 IPR018082 -
Bva08g01443 479 PRINTS Pollen allergen Amb family signature 450 473 IPR018082 -
Bva08g01443 479 PRINTS Pollen allergen Amb family signature 355 374 IPR018082 -
Bva08g01443 479 PRINTS Pollen allergen Amb family signature 175 200 IPR018082 -
Bva08g01443 479 PRINTS Pollen allergen Amb family signature 275 296 IPR018082 -
Bva08g01443 479 PRINTS Pollen allergen Amb family signature 377 396 IPR018082 -
Bva08g01443 479 PRINTS Pollen allergen Amb family signature 211 227 IPR018082 -
Bva08g01443 479 PRINTS Pollen allergen Amb family signature 419 443 IPR018082 -
Bva08g01443 479 PANTHER PECTATE LYASE 18-RELATED 44 479 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01443 Bva-Chr8 7564919 7567839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01443 48 479 Polysaccharide Lyase AT5G15110 55.955 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01443 K01728 - mnt:21397384 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01443 08 7564919 7567839 Bva08g01443 08 7564919 7567839 ECH
Bva08g01443 08 7564919 7567839 Bva05g00449 05 2214896 2216747 ECH
Bva08g01443 08 7564919 7567839 Bva03g01278 03 12483559 12485736 ECH
Bva08g01443 08 7564919 7567839 Bva04g01214 04 8350559 8353260 ECH