Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01435 ATGGAATCGCAGTTGGGTTTGATAGACGAATCATTCAGTAACCGTTACTCGAACTATGTCTATGAGGCACTTGACGAATTGCCCAATAGTTTTACAATCACCGACCCTTCCATTTCTGGCCACCCAATTGTGTTTGCAAGCCGTGAATTCCTGAAAATGTCGGGGTATTCTAAAGACGAGGTGATTGGGAAGAATGGGAGGATCTTTCAAGGACCCGGTACTTGTAGAAGATCGATAATGGAAATTCGAGATGCAATAAGGGCTGAGAGAACCATTCAGAtgaatttgttgaattatCGTAAAGATGGGACACTCTTTTGGATGCTATTTCATATGAGCCCTGTCTTTAGCAAGGATGATGGAAGAGTGATACACTTCGTGGCAGTTCAAGTACCTTTATCGAAAAAACGAAGGAGGTCTAGTTGTGGATATAGAAGAAATGGAACTAGTTTGTCTGAGGATGGCTCGCAGGTGCaggattttgtttttgggtcTTGTAGGAAGGAAGTGTGTTCGGATTCTTTGATGGAACTGGGTCGTGTTTTGTCCCTGGAACAAATGTTGGAACATGATATTAGAGAATCAGAGCATGAAGAGCCATGCGAAGCAAGTGATGCTGAGAAGAGGGAATCTATGACTGGAATGGACAACATCTTTTCTTTGCTAACTCACTACAGCGAGTTAACTGGCAGATTGGTGTGCAGAAAGAGATGCAGCGTCCCTGACGTGGGTCTTCTTAGCTCATCCTTGATTATTTCACTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACACTTACCTGACATGCCAATTGTGTACGCCAGTGATGCCTTCTTGAAATTGACAgGTTATGCAAGAGATGAAGTGTTGGGGCGCAATTGTAGATTTTTAAGTGGACTTAGCACTGATGCTTCAACTTTATGTCTGATAAGGGAAAGCATTGAGGCTGAACAACCATGCACAGTGCGTATTTTGAATTACAGGAAGGATAAAAGCTCGTTTTGGAATCTTCTCCATGTATCACCTGTTCGTGATGCTTGTGGCAAGATAGTATACTTGGTGAATGTTCATATAGAAGAACAAGGCTGTAATGGTAAGACGCAGGAGAGACGGGGCATGAGCCCCGAGAAGAGACTGCTGAGCGTGATTGGTTCTGTCAAGATTGCCGTGAGGAGTTCATCAATCAGTGCTGGATCTTCAGAGTCATA 1214 0.4209 MESQLGLIDESFSNRYSNYVYEALDELPNSFTITDPSISGHPIVFASREFLKMSGYSKDEVIGKNGRIFQGPGTCRRSIMEIRDAIRAERTIQMNLLNYRKDGTLFWMLFHMSPVFSKDDGRVIHFVAVQVPLSKKRRRSSCGYRRNGTSLSEDGSQVQDFVFGSCRKEVCSDSLMELGRVLSLEQMLEHDIRESEHEEPCEASDAEKRESMTGMDNIFSLLTHYSELTGRLVCRKRCSVPDVGLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYARDEVLGRNCRFLSGLSTDASTLCLIRESIEAEQPCTVRILNYRKDKSSFWNLLHVSPVRDACGKIVYLVNVHIEEQGCNGKTQERRGMSPEKRLLSVIGSVKIAVRSSSISAGSSES 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01435 404 SMART pac_2 323 363 IPR001610 -
Bva08g01435 404 SMART pac_2 93 136 IPR001610 -
Bva08g01435 404 CDD PAS 43 130 IPR000014 -
Bva08g01435 404 ProSiteProfiles PAS repeat profile. 273 295 IPR000014 -
Bva08g01435 404 Pfam PAS domain 29 131 IPR000014 -
Bva08g01435 404 Pfam PAS domain 260 355 IPR000014 -
Bva08g01435 404 TIGRFAM sensory_box: PAS domain S-box protein 273 357 IPR000014 -
Bva08g01435 404 TIGRFAM sensory_box: PAS domain S-box protein 43 128 IPR000014 -
Bva08g01435 404 ProSiteProfiles PAC domain profile. 90 145 IPR000700 -
Bva08g01435 404 CDD PAS 269 358 IPR000014 -
Bva08g01435 404 SMART pas_2 248 321 IPR000014 -
Bva08g01435 404 SMART pas_2 18 87 IPR000014 -
Bva08g01435 404 ProSiteProfiles PAS repeat profile. 16 65 IPR000014 -
Bva08g01435 404 SUPERFAMILY PYP-like sensor domain (PAS domain) 263 358 IPR035965 -
Bva08g01435 404 Gene3D PAS domain 30 162 - -
Bva08g01435 404 Gene3D PAS domain 260 400 - -
Bva08g01435 404 PANTHER PROTEIN TWIN LOV 1 8 401 - -
Bva08g01435 404 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 130 IPR035965 -
Bva08g01435 404 PANTHER PROTEIN TWIN LOV 1 8 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01435 Bva-Chr8 7521646 7524916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01435 15 393 AGC Kinase Gene Family AT5G58140 31.059 4.54e-57 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01435 - - csin:114286684 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01435 08 7521646 7524916 Bva08g01435 08 7521646 7524916 ECH