Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01430 ATGAGCCGCAAGCGAGAGAAACCCTACTTTTCCCGCCACGCCCCGTCCTTTGCCGCCAAGAGGCGTCGCCCTTTGCCTCCGTTACCCACTGTCGATGAAGACAGTGAGAAGCAGAAAACAAGGCCAGCGCCACCATCCGCAGTGGTGGTCATGGGTCTTCCTTTAGACTGCTCCGTCCTCGACCTCAAGTCCCGATTCGAGATCTATGGCGCCATCTCCCGCATCCGCATCGACCGTGATGGGGTTGGCTACATTACTTTTCGGACCAAGGAATCTGCCGACGCCGCCATCGCTGCTGGCCTTGACCCTTCGTTTGGAATCACAGTAAACTCGAAAAAGGTCCAGGTATTGTGGGCAACTGATCCTCTGGCCATGTGGAGGGAAGGAATTAGTAATAATAAGGATAAAGGGTCTATGTCAAAGCTTGTGCGTGCTGAGGTGCCTCTGAGTAGACATGGAAGAGGTAATAAACTTGCTTCAGCTGTAGGGAATCCCAAAACTAGTGAAGGTAGCTCAGGAAGCCCAACGCAGGACATGCCTTTCAGGGGCAGAGAAATTATTGCTTATGATGATATCCTGTA 581 0.5232 MSRKREKPYFSRHAPSFAAKRRRPLPPLPTVDEDSEKQKTRPAPPSAVVVMGLPLDCSVLDLKSRFEIYGAISRIRIDRDGVGYITFRTKESADAAIAAGLDPSFGITVNSKKVQVLWATDPLAMWREGISNNKDKGSMSKLVRAEVPLSRHGRGNKLASAVGNPKTSEGSSGSPTQDMPFRGREIIAYDDIL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01430 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 121 IPR000504 GO:0003723
Bva08g01430 193 Gene3D - 29 183 IPR012677 -
Bva08g01430 193 SMART rrm1_1 47 117 IPR000504 GO:0003723
Bva08g01430 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 98 IPR000504 GO:0003723
Bva08g01430 193 MobiDBLite consensus disorder prediction 154 180 - -
Bva08g01430 193 CDD RRM_SF 48 116 - -
Bva08g01430 193 SUPERFAMILY RNA-binding domain, RBD 29 128 IPR035979 GO:0003676
Bva08g01430 193 MobiDBLite consensus disorder prediction 161 178 - -
Bva08g01430 193 MobiDBLite consensus disorder prediction 26 40 - -
Bva08g01430 193 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01430 Bva-Chr8 7485873 7487223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01430 1 193 Homeobox Transcription Factor Family AT1G27050 52.195 1.33e-65 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01430 - - gmx:106797175 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01430 08 7485873 7487223 Bva08g01430 08 7485873 7487223 ECH