Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01397 ATGGATCCGGGTGCGATGATGAACGAGGGTTCCTTTGCGAATGGGATTGCTAATGCGGCGCCGTTTAACTTGGCGGAGATCTGGCATTTCCCGATGAGTGGCGGTGCGGGTCTCGGAGAATCTGGAGGCGGGTTGGGATTGAGGAGGCCGCAGCTTGGGCATAATTTGGAGCAGCTCAGTGATTTTGCGGGTCCGAATCGGGATGTTCCGGATAATGATCCAGTCAGTTCGGAGCAGAGAGCAAATCATGGTGtcaataataagaaaagacGCAATGCGGAGGAGGAATCTGCCAAGGGTGTCTCCACCAGCAATGGTTGCAATGGCGTGAATGATGGTGACGGAAAACGGCTTAAAACTTCAGGGAGCAAGAATGAGAGCCGTGATACTAAAGCTCATGCAGAACCCAGTTCAGGCAAGCCTGTGGAACAAAGTACTCAGCCACCTGCTGAGCCTCCCAAGCAAGATTATATCCATGTTCGAGCGAGACGGGGTCAAGCTACGGACAGCCACAGTCTAGCAGAAAGAGCTAGGAGGGAAAAGATAAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTTCTTgatgagataattaattatatccaaTCCCTACAACGGCAAGTTGAGTTCTTGTCAATGAAGCTTGAGGCTGTAAATTCAAGAATGAACCCTGGCATTGAAGTGTTTCCTCCTAAAGATTTTGGTCAACAAACATTTGACACAGCTCCCATGGCATTTGGTTCACAAGCTACCAGAGAGTATAGTCGTGGATCATCACCAGAGTGGTTACATATGCAGGTAGGAGGTGGTTTCGAAAGAACAACATA 863 0.4681 MDPGAMMNEGSFANGIANAAPFNLAEIWHFPMSGGAGLGESGGGLGLRRPQLGHNLEQLSDFAGPNRDVPDNDPVSSEQRANHGVNNKKRRNAEEESAKGVSTSNGCNGVNDGDGKRLKTSGSKNESRDTKAHAEPSSGKPVEQSTQPPAEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPGIEVFPPKDFGQQTFDTAPMAFGSQATREYSRGSSPEWLHMQVGGGFERTT 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01397 287 MobiDBLite consensus disorder prediction 117 136 - -
Bva08g01397 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 216 IPR011598 GO:0046983
Bva08g01397 287 SMART finulus 172 222 IPR011598 GO:0046983
Bva08g01397 287 MobiDBLite consensus disorder prediction 83 97 - -
Bva08g01397 287 CDD bHLH_AtBPE_like 156 241 - -
Bva08g01397 287 MobiDBLite consensus disorder prediction 33 154 - -
Bva08g01397 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 235 IPR036638 GO:0046983
Bva08g01397 287 PANTHER BNAC05G07950D PROTEIN 1 287 - -
Bva08g01397 287 Coils Coil 213 233 - -
Bva08g01397 287 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983
Bva08g01397 287 Gene3D - 163 237 IPR036638 GO:0046983
Bva08g01397 287 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 287 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01397 Bva-Chr8 7325950 7328850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01397 1 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 55.714 3.39e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva08g01397 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01397 - - mnt:21394273 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01397 08 7325950 7328850 Bva08g01397 08 7325950 7328850 ECH