Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01382 ATGAAGAGGTCGAGAGATGATGTTTTTATGAGTTCTCAACTCAAACGGCCTATGGTGTCTTCTCGAGGAGAAGCCTCCGGGCAACCTCAGATGATGGGAGGAGGTGGTCAGAAACTAACTACAAATGATGCCTTAGCATATCTGAAGGCAGTAAAGGATATATTTCACGATAAGAGGGAAaagtatgatgattttttggAAGTCATGAAGGATTTCAAGGCTCAGCGAATTGATACTGCAGGTGTCATAGCAAGAGTGAAGGATTTATTTAAAGGGCATAGAGATCTAATTTTGGGATTCAACACCTTCTTGCCCAAAGGATATGAAATCACACTCCCACTGGAAGATGAACAACCGCCCCAAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACaaaattaagAATCGCTTTCAAGGTGATGACCATGTTTACAAGTCGTTTTTAGACATATTGAATATGtacagaaaggaaaataagtcAATTCATGAGGTGTACCAAGAGGTTGCTGGACTTTTCCAAGACCACCCGGACCTTCTTGAGGAATTTACTCATTTTCTTCCTGATGCTTCAGCAACGGCCTCTTTGCATTTTGCTCAATCTGCTCGGAATTCTATGCTTCGTGATAGGAGCTCTGCAATGCCGGCAGGGCGGCAAATGCATGTTGACAAGAGAGAAAGGGCAATAAGTTCACATGGTGATCGTGACCTCAGTGTAGACCCTCCTGATTCAGATCATGACAAACTGTTGATGAGGGACAAGGAGCAGAGAAGGCAGAAAGAAAAGGATCAGAGAGAAGACAGAGACTATGAGAATGATGGTAGTCGAGACTTTAATATGCAGCGTTTCCCCCACAAGCGGAAATCTGGTCGTAGGGCTGAAGATTCTGCTGCTGACCCATTGCATCAACGAGGTGATGGTGATGAGAATTTTGGCATGCTTCCCATGTCATCTGCTTGCGACAATAAAAATTCTGTGAAAACTTTTTCAGGCATGTACAGTCAAGAGTTAGCTTTCTGTGATAAAGTCAAGGAGAAATTACCAAATACTGAGGATTATCAGGAATTTTTGAAGTGTCTACATATCTATAGCAGGGAGATCATTACACGACAAGAATTGCAGTCACTGGTCGGTGATCTACTGGGAAAATATCCAGACCTTATGGATGagtttaatgaatttttggtACAATGTGAAAAGAAtgAAGGATTCCTAGCTGGTGTCATGAACAATAAAAAGTCCATATGGAGTGAAGGACAAAAACCAGTTAAAATGGAGGAGCGGGATAGAGATCGAGAACGTGATAGGGATAGGGATGATTGGGTTAAGGAAAGGGATCACGAAACACGAGAAAGGGACAAATCTGCTGTGTTTTCTAACAAGGATGTTTCTGGTCCTAAGATGTCTCTATTTTCTAGCAAGGATAAGTATTTGGCAAAACCTATAAGTGAGCTGGACCTTTCTAACTGTGAGCGCTGCACTCCCAGTTACCGTCTCCTACCCAAAAATTATCCCATACCTACAGCTAGCCAGAGAACAGAGCTTGGTGCTGAACTATTGAATGATCATTGGGTGTCTGTCACTTCAGGAAGTGaggattattcttttaaacacATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTGGATATGTTGTTAGAGTCTGTGAATGTAACAACCAAACGAGTAGAAGAGCTCTTAGATAAgatcaataataatacaattaaagGGGACAGTCCAATTCGCATTGAGGAGCACTTAACAGCTTTAAATCTAAGGTGCATCGAACGATTATATGGTGACCATGGGCTTGATGTCATGGATGTGTTAAGAAAGAATGCACCTCTAGCTTTGCCAGTAATATTAACTCGCTTGAAGCAGAAACAGGAAGAGTGGGCTAGGTGTCGTGctgattttaataaagtttgggCTGAAATTTATGCAAAGAACTATCACAAGTCTCTTGATCATCGGAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACGAAAGCCTTGCTGGCAGAAATCAAGGAAATCAGTGAGAAGAAACGCAAAGAAGATGATGTTCTACTTGCAATTGCTGCTGGAAATAGACGGCCTATTCTTCCAAATCTGGAATTTGGGTATCCCGATCCTGATATTCATGAAAACCTGTATCAACTCATAAAATATTCCTGTGGTGAAGTTTGCACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACCTTCTTAGAAGCCATGCTTGGTGTTCCTTCTCGACCCCAGGGACCTGAGGATACAGAAGATGTTGTCAAGGCTAACAATAATTCTGTCAAAAGTGGCACCACAAGTGTTGCCGAGAATGATGCTAGTCCTGCTGTTGGTGCTGCTAAACATTTAAATACTTCTAGAAATGGAGATGAGAGTATTCCACTAGAACAATCAAATTCTTGCAGAGGATGGCAAACAAATGGGGTTGGTGGGATTAAAGAAGATAACCATCTTGATGCAGACCGAACTTCGCGCAAATCTGAAACTTTGGGCAACAATACACAGCATGGTAAAATGCATAGTAGTGTAGCTATGCCTGATGAAGTATCAGGCGTCAACAAGCAAGATCATTCCTATGAACGGTTAGCAAATGCTAATCCCTCTGTGGCTTCCGGAATTGATCAAAGTAATGCAAGGACAAATATAGATAATGCATCAGGGCTTAATACTACTCCATCTAGACCTGGAAATGTTGCTGTCGAGGGAGGAATTGGTTTACCTTCATCAGAGGGTGGTGATTCTACAAAACCAGTTACATCCACAACTGGGCCAACATGTGAAGGCCCCAAAGGTCAGAGATACCAAGAAGAATCTGTTGGGCacttaaaaagtgaaagagaagAGGGTGAATTATCTCCAAATGGCGATTTTGAGGAGGATAATTTTGCAGTTTATGGAGATGGAGGTGAAAATGATGCTGATGCTGATGATGAGGGTGAAGAAAGTCATCACAGGTCTTCAGAGGACAGTGAAAATGCTTCTGAAAATGGAGATGTTTCAGGAAGCGAGTCTGCTGATGGTGAAGAATGTTCTCGAGAAGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATGGCTGATGACAATGATGTTGAAGGAGATGGAACCTCATTACCCTTTTCAGAGCGCTTCCTACGAACTGTAAAGCCTCTTGCGAAGCATGTTTCCCCAGCATTGCATGAGAAAGAAAGGGATTCTcgaattttttatggaaatgattccttttatgttcttttcaGGCTTCATCAAACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCTGCTGAAAGAAAGTGGAGGGCTCCAAATGACACAAGCTCTACTGATCAATTTGCCAGGTTCATGGATGCCCTTTACAATTTACTGGATGGTTCTTCTGACAATACAAAATTTGAGGACGACTGCCGAGCTATTATTGGGACTCAATCATATGTCTTATTCACATTGGACAAGCTGATTTATAAACTTGTCAAACAGCTTCAAGCAGTTGCCACTGATGAAATGGACAACAAGCTCCTTCAACTTTATGCATATGAGAAATCAAGAAAACCTGGAAGATTTATTGATATAGTTTATCATGAGAATGCCCGTGTCCTTCTTCATGATGAGAACATATATCGTATTGAATGTTCATCTTCACCAACTCGGTTGTCTATTCAACTGATGGACTACGGACATGATAAGCCTGAAGTGACTGCTGTATCGATGGACCCAAATTTTTCAGCTTATCTGCATAACGATTTCCTCTCTGTTGTTCCTGACAAAAAGGAGAAGTCAGGGATTTTCTTGAAGAGgAACAAGCGTAGATATGCATGTGGTGATGAATTTTCAAGCCAAGCTATGGAGGGCCTGCGAGTTATTAATGGTCTGGAGTGTAAGATAGCTTGCAACTCATCTAAGGTTTCATACGTTTTGGATACTGAAGACTTTTTATTTCGgatgagaaagaagaggagaacATCGCATCAGAACAGCTCGAGCCAAGAACAGGCAAAGTCTTCAAACATTATTTCAAGCAGAGTGCAACGTTACTACTTTTTCGATGTTATTGATGTTGATAGCATGAAATATTCTGTGGCTGCAATTAGCCTCCAGATTCAAATACGCACAGTTTTGTCCAATACTTG 4229 0.397 MKRSRDDVFMSSQLKRPMVSSRGEASGQPQMMGGGGQKLTTNDALAYLKAVKDIFHDKREKYDDFLEVMKDFKAQRIDTAGVIARVKDLFKGHRDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKNRFQGDDHVYKSFLDILNMYRKENKSIHEVYQEVAGLFQDHPDLLEEFTHFLPDASATASLHFAQSARNSMLRDRSSAMPAGRQMHVDKRERAISSHGDRDLSVDPPDSDHDKLLMRDKEQRRQKEKDQREDRDYENDGSRDFNMQRFPHKRKSGRRAEDSAADPLHQRGDGDENFGMLPMSSACDNKNSVKSMYSQELAFCDKVKEKLPNTEDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMDEFNEFLVQCEKNEGFLAGVMNNKKSIWSEGQKPVKMEERDRDRERDRDRDDWVKERDHETRERDKSAVFSNKDVSGPKMSLFSSKDKYLAKPISELDLSNCERCTPSYRLLPKNYPIPTASQRTELGAELLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFGYPDPDIHENLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEAMLGVPSRPQGPEDTEDVVKANNNSVKSGTTSVAENDASPAVGAAKHLNTSRNGDESIPLEQSNSCRGWQTNGVGGIKEDNHLDADRTSRKSETLGNNTQHGKMHSSVAMPDEVSGVNKQDHSYERLANANPSVASGIDQSNARTNIDNASGLNTTPSRPGNVAVEGGIGLPSSEGGDSTKPVTSTTGPTCEGPKGQRYQEESVGHLKSEREEGELSPNGDFEEDNFAVYGDGGENDADADDEGEESHHRSSEDSENASENGDVSGSESADGEECSREEHDNKAESEGEAEGMADDNDVEGDGTSLPFSERFLRTVKPLAKHVSPALHEKERDSRIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRAPNDTSSTDQFARFMDALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYAYEKSRKPGRFIDIVYHENARVLLHDENIYRIECSSSPTRLSIQLMDYGHDKPEVTAVSMDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRRYACGDEFSSQAMEGLRVINGLECKIACNSSKVSYVLDTEDFLFRMRKKRRTSHQNSSSQEQAKSSNIISSRVQRYYFFDVIDVDSMKYSVAAISLQIQIRTVLSNT 1406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01382 1406 MobiDBLite consensus disorder prediction 232 309 - -
Bva08g01382 1406 MobiDBLite consensus disorder prediction 418 446 - -
Bva08g01382 1406 MobiDBLite consensus disorder prediction 881 920 - -
Bva08g01382 1406 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Bva08g01382 1406 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Bva08g01382 1406 MobiDBLite consensus disorder prediction 1029 1049 - -
Bva08g01382 1406 MobiDBLite consensus disorder prediction 232 313 - -
Bva08g01382 1406 MobiDBLite consensus disorder prediction 419 446 - -
Bva08g01382 1406 SUPERFAMILY PAH2 domain 328 395 IPR036600 GO:0006355
Bva08g01382 1406 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Bva08g01382 1406 MobiDBLite consensus disorder prediction 807 1065 - -
Bva08g01382 1406 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1359 - -
Bva08g01382 1406 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Bva08g01382 1406 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Bva08g01382 1406 MobiDBLite consensus disorder prediction 936 952 - -
Bva08g01382 1406 Pfam Sin3 family co-repressor 491 583 IPR013194 -
Bva08g01382 1406 Pfam C-terminal domain of Sin3a protein 1096 1342 IPR031693 -
Bva08g01382 1406 MobiDBLite consensus disorder prediction 1002 1016 - -
Bva08g01382 1406 Gene3D Paired amphipathic helix 327 400 IPR036600 GO:0006355
Bva08g01382 1406 PANTHER SIN3B-RELATED 1 1359 IPR039774 GO:0003714
Bva08g01382 1406 ProSiteProfiles PAH domain profile. 329 398 IPR003822 GO:0006355
Bva08g01382 1406 Pfam Paired amphipathic helix repeat 351 395 IPR003822 GO:0006355
Bva08g01382 1406 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Bva08g01382 1406 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Bva08g01382 1406 MobiDBLite consensus disorder prediction 809 830 - -
Bva08g01382 1406 SMART hdac_interact2seq4b 489 589 IPR013194 -
Bva08g01382 1406 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Bva08g01382 1406 MobiDBLite consensus disorder prediction 958 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01382 Bva-Chr8 7237108 7247476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01382 28 142 WRKY Transcription Factor Family AT4G12020 52.137 3.48e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva08g01382 Sin3a_C 6.1e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01382 K11644 - mnt:21394293 2146.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01382 08 7237108 7247476 Bva08g01382 08 7237108 7247476 ECH