LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g01347	atgccGGGTAATCGATCAAAGTCGGAGAAGCATGATGCTGCGAAGCAGGTCCGGCGGGATCCTTACGAGGTTCTCGGTGTCTCGCGCAACTCAACGGATCAGGAAATCAAAAGTGCTTACAGGAAAATGGCTCTCAAATATCATCCTGACAAGAATGCTAATGATCCTGAAGCAGCTGATATGTTTAAAGAGGTTACCTTTTCGCATAATATCTTGTCAGATCCAGAGAAAAGGCGTCAGTATGATTCAGCTGGTTTTGAGGCTGTTGAATCAGATAACCAAGAATTAGAGTTGGATCTTTCAAGTTTGGGTGCTGTAAATACAATGTTTGCTGCACTTTTTAGTAAACTTGGTGTTCCAATTAAGACAACTGTTTCTGCAACTGTTTTGGAAGAGGCACTTAATGGTTTGGTGATCATTCGTCCACTTCCATTGGGGCAGGCTATATCTAAGAGGGTTGAGAAGCAATGTGCTCACTTCTATTCAGTTACAATAACAGAAGAGGAAGCACGGGCTGGATTTGTTTGCCGAGTACAATCATCAGATAAAAGCAAGTTCAAGttattatattttgatcaagAAGAGAATGGTGGATTAAGTCTTGCACTCCAgGAAGACAGTGCAAAAACAGGGAAGGTTACATCTGCTGGAATGTATTTTCTTGGGTTTCCAGTTTATCGATTGGATCAAACAACAAACTCAATAGCTGCCGCTAAGGATCCAGATACTTCTTTTTTCAGAAAGCTTGATGGGTTCCAACCATGTGAATTAACGGAACTGAAGGCTGGCACCCATGTCTTTGCTGTTTATGGTGACAACTTTTTCAAAAGTGCAAGCTATACGATAGAAACTATATGTGCTGCTCCTTTtggtgaagaaaaagagaatctGAGGAATATAGAAgctcaaattttatcaaaaagggCAGAACTATCCAAGTTTGAAACTGAATACCGAGAGGTTTTGGCACAATTCACGGAGATGACTAGCAGATACGCGCAAGAAATGCAAGCGATTGATGAGCTACTGAAGCAAAGAAGTGAGATACACGCATCATATACAATTGCTCCTTTGAAGAGGAGTACAAGTAAGAGCCGGAGTAGAGGTTCTTCCAAAGAGCCTAAAGAAGATGGACaagcaagagagaaaagaCATACCAGAGATCggccaaaaaagaagaaatggtaTAATATACACCTAAAAGTTGATAAGAGAAAGGCTTGCTA	1226	0.3801	MPGNRSKSEKHDAAKQVRRDPYEVLGVSRNSTDQEIKSAYRKMALKYHPDKNANDPEAADMFKEVTFSHNILSDPEKRRQYDSAGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGLVIIRPLPLGQAISKRVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDQEENGGLSLALQEDSAKTGKVTSAGMYFLGFPVYRLDQTTNSIAAAKDPDTSFFRKLDGFQPCELTELKAGTHVFAVYGDNFFKSASYTIETICAAPFGEEKENLRNIEAQILSKRAELSKFETEYREVLAQFTEMTSRYAQEMQAIDELLKQRSEIHASYTIAPLKRSTSKSRSRGSSKEPKEDGQAREKRHTRDRPKKKKWYNIHLKVDKRKAC	408

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g01347	408	SMART	dnaj_3	19	77	IPR001623	-
	Bva08g01347	408	Gene3D	DnaJ domain	4	103	IPR036869	-
	Bva08g01347	408	PANTHER	DNAJ DOMAIN-CONTAINING PROTEIN-RELATED	1	407	-	-
	Bva08g01347	408	MobiDBLite	consensus disorder prediction	1	28	-	-
	Bva08g01347	408	Pfam	DnaJ domain	20	82	IPR001623	-
	Bva08g01347	408	MobiDBLite	consensus disorder prediction	1	19	-	-
	Bva08g01347	408	CDD	DnaJ	20	74	IPR001623	-
	Bva08g01347	408	ProSiteProfiles	dnaJ domain profile.	20	85	IPR001623	-
	Bva08g01347	408	PANTHER	DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)	1	407	-	-
	Bva08g01347	408	Coils	Coil	297	317	-	-
	Bva08g01347	408	ProSitePatterns	Nt-dnaJ domain signature.	62	81	IPR018253	-
	Bva08g01347	408	MobiDBLite	consensus disorder prediction	385	400	-	-
	Bva08g01347	408	MobiDBLite	consensus disorder prediction	366	384	-	-
	Bva08g01347	408	SUPERFAMILY	Chaperone J-domain	19	89	IPR036869	-
	Bva08g01347	408	MobiDBLite	consensus disorder prediction	354	408	-	-
	Bva08g01347	408	PRINTS	DnaJ domain signature	77	96	IPR001623	-
	Bva08g01347	408	PRINTS	DnaJ domain signature	22	40	IPR001623	-
	Bva08g01347	408	PRINTS	DnaJ domain signature	57	77	IPR001623	-
	Bva08g01347	408	PRINTS	DnaJ domain signature	40	55	IPR001623	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g01347	Bva-Chr8	7066118	7070680	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva08g01347	13	83	C2H2 Transcription Factor Family	AT1G74250	40.789	2.60e-11	63.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g01347	-		-	gmx:100800929	723.391