Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01346 ATGGAAAAGGATGTCTGtgatctttcttcttcatgggATGGAGAAAATGATCATTCTGTGGAGAAGAGGCTCAAATTGTTTGGCTTTGAGCTGAACCCTTGTGCTAAGAACGATGATGGGTGTGTCAAAGAATCTGCAGAAGGAGACGAGAGCGTCAACTCCTCAAACTCATTTTCATCTGGTGGAGATCAGAAAACAACACAGCAACAGGAGAAGAGCTCAATGACCAGATCAGACCCAGATGAGAGAAAGTTCGAGTGCCAATATTGTTTCAAGGAATTTGCAAATTCACAAGCATTAGGTGGGCACCAGAATGctcacaagaaagaaagaatgaagaagaaaaggttgCAGCTTCAAGCCAGAAAAGCCAGCATAAAGTATTACCTGCAACCTTTCCAGAGCAACCATGGCTTTGCTCACCATGCTTCTACTCCTTGGTTCTATGATCCCTCTTCCTATGACAACTCTGAGTTCACTCTCTATGAAGAACCTCAGATTTGCTTCAATTCAAATGACCAAAAAGGAATTCTTAATGGGTTTGATCAGAAATCAAAGTGGTATTCTGCGCCACCCCATGTCCCTTCACAACAAGATTCATCCATGTTCACTTTTTCACATTCATATAACAACACCCCTTTCATCTTCAAGCCTTGCCACTTCCCTGCTTCAAACCAGACCCATAATAAAGCCTTGGATCTTCAACTATGCCTCAACTTGCAGTCAAATACAAGAAGCTG 740 0.3959 MEKDVCDLSSSWDGENDHSVEKRLKLFGFELNPCAKNDDGCVKESAEGDESVNSSNSFSSGGDQKTTQQQEKSSMTRSDPDERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASIKYYLQPFQSNHGFAHHASTPWFYDPSSYDNSEFTLYEEPQICFNSNDQKGILNGFDQKSKWYSAPPHVPSQQDSSMFTFSHSYNNTPFIFKPCHFPASNQTHNKALDLQLCLNLQSNTRS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01346 246 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Bva08g01346 246 MobiDBLite consensus disorder prediction 32 80 - -
Bva08g01346 246 MobiDBLite consensus disorder prediction 48 74 - -
Bva08g01346 246 PANTHER ZINC FINGER PROTEIN 5 12 241 IPR044299 GO:0010090
Bva08g01346 246 Gene3D Classic Zinc Finger 55 137 - -
Bva08g01346 246 PANTHER ZINC FINGER PROTEIN 5 12 241 - -
Bva08g01346 246 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Bva08g01346 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01346 Bva-Chr8 7058942 7059875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01346 83 194 C2H2 Transcription Factor Family AT1G10480 48.800 6.48e-17 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva08g01346 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01346 - - gmx:100799857 319.701