Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01305 atgtcCTATTGGGACTTCAAAAGATTCTACTCTAAAGTGTTAGCTCTTGAAAGTATGATAGGTTATCAACAAATTTCCATCGTTTTTCAGGTTGATACTGGTTGCGGAGTTGGGAAAATGTCTCGGGTTTATGTTGGGAATTTGGATCCTCGAGTTTCGGAGAGGGAGCTCGAAGATGAATTTCGGATGTTCGGTGTTCTCCGGAGTGTCTGGGTTGCTCGAAGACCACCAGGATATGCATTTATTGAGTTTGATGATAGGAGGGATGCTCTTGATGCAATTCATGCTTTGGATGGCAAGAATGGTTGGCGTGTAGAGCTTTCTCATAATTCCAAGGGTGGTGGAGGCCGTGGTGGACATGGTCGTGGAGGTGAGGACTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCTAGAGAATGCCGTTTGCGAATTGGTTCACGAGGCTCAGGAAGTGGACGACGACGAAGCCCTAGTCCTTATCGACGCCGTAGAAGTCCAAGTTATGGGTATGGCCGCAGGAGTTATAGTCCACGTGGAAGAAGATCTCCAAGACGACGCAGCATATCCCCTCAGCGCGGTCGCAGCATTAGCAGGTCCCCTCAACACCGACATTCTCGCCGGGACTCACCTTATGCCAATGGagATTA 653 0.4778 MSYWDFKRFYSKVLALESMIGYQQISIVFQVDTGCGVGKMSRVYVGNLDPRVSERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIHALDGKNGWRVELSHNSKGGGGRGGHGRGGEDLKCYECGEPGHFARECRLRIGSRGSGSGRRRSPSPYRRRRSPSYGYGRRSYSPRGRRSPRRRSISPQRGRSISRSPQHRHSRRDSPYANGD 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01305 217 Gene3D - 119 189 - -
Bva08g01305 217 CDD RRM_SRSF3_like 42 110 - -
Bva08g01305 217 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 30 215 - -
Bva08g01305 217 SUPERFAMILY Retrovirus zinc finger-like domains 118 145 IPR036875 GO:0003676|GO:0008270
Bva08g01305 217 SMART c2hcfinal6 128 144 IPR001878 GO:0003676|GO:0008270
Bva08g01305 217 MobiDBLite consensus disorder prediction 147 217 - -
Bva08g01305 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 112 IPR000504 GO:0003723
Bva08g01305 217 SUPERFAMILY RNA-binding domain, RBD 40 122 IPR035979 GO:0003676
Bva08g01305 217 Pfam Zinc knuckle 128 143 IPR001878 GO:0003676|GO:0008270
Bva08g01305 217 ProSiteProfiles Zinc finger CCHC-type profile. 128 143 IPR001878 GO:0003676|GO:0008270
Bva08g01305 217 SMART rrm1_1 42 108 IPR000504 GO:0003723
Bva08g01305 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 100 IPR000504 GO:0003723
Bva08g01305 217 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1 30 215 - -
Bva08g01305 217 Gene3D - 37 112 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01305 Bva-Chr8 6837385 6842541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01305 41 100 Eukaryotic Initiation Factors Gene Family AT4G34110 37.500 2.01e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01305 K12896 - cit:102606665 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01305 08 6837385 6842541 Bva08g01305 08 6837385 6842541 ECH