Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01299 ATGCGTTATTCTAAGATGTCTTGGGTTCACTCAGAAATTCATCAAAGGAGTGCTGCTCTGACCAGCCATCCTGTTCTTTCACCTTCTTCTTCTACATTGCCTTACGGTTCCGACTTCCAAAAGCAATCGAGCCCACATCCGGTTTCTTCGTCTAGCAGTAAAATAAGCCCTGcagttctttttattatagtCGTTTTAGCTATTGTTTTTTTCATCTCTGGTCTCCTTCACTTGCTTGTTAGATATCTTGTAAAGCACAGGTCTTCTTCATCAATCTCTCAATCCAATAGATACCCAGATATGTCTGAATCTGATGCTTACCAGAGACAGTTACAGCAACTCTTCCATCTTCATGATTCAGGCTTAGATCAGGCTTTCATAGATGCTCTCCCCGTCTTCCTTTATAAAGAGATAATAGGCTTGAAAGAGCCGTTTGATTGTGCTGTTTGCCTTTGTGAATTCTCAGAAGAAGACAAGCTGAGATTGTTACCCTTGTGCAATCATGCTTTTCACATTGACTGCATAGACACATGGTTACTGTCTAATTCTACTTGTCCTCTCTGTAGAGGTACCCTTTATGCACCAGGCTTTGCATTTGAAAACCCAGTTTTTGACTTTGAAGATCCAAGGGAAGAAGATGGGGTTTCAGGCAGTGGTGGAGGTGGGGTTGGTTCTTTCCGCAAACCTGCAGAAAATGACATTACTGTTGGAAAAAGGGTGTTTTCGGTTAGACTTGGAAAATTTAGAAGCTCAAACATTGGACAGGGAGTAGAAAGAGGTGAAGGGGAGAGTAGTAACAGTAAGTTGGATGCAAGAAGATGCTATTCAATGGGATCTTGCCAATATGTGGTTGCTGATTCAGACCTCCGTGTGGCTTTATGCCTTAATAGAGTTAATGGAAGTACCAGTAGCAGTTTTAGACAATTGAAAGGAAGGGCAACCCTCAATGGGAATTCTTCCACTGAAGGGGATGCAGAGGGCAAAAGGCTTAACCTTGCCAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGGTCTGGCAATGGTCCAAGAAAGATAAATTGCCAAGTTGTTCAGAAACCCATATGGGCAATTCTACTGTCACTGCGAATTCACCATGGATGATCAGAACAAGAGGTACATG 1139 0.4197 MRYSKMSWVHSEIHQRSAALTSHPVLSPSSSTLPYGSDFQKQSSPHPVSSSSSKISPAVLFIIVVLAIVFFISGLLHLLVRYLVKHRSSSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFLYKEIIGLKEPFDCAVCLCEFSEEDKLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGTLYAPGFAFENPVFDFEDPREEDGVSGSGGGGVGSFRKPAENDITVGKRVFSVRLGKFRSSNIGQGVERGEGESSNSKLDARRCYSMGSCQYVVADSDLRVALCLNRVNGSTSSSFRQLKGRATLNGNSSTEGDAEGKRLNLARKGESFSVSKVWQWSKKDKLPSCSETHMGNSTVTANSPWMIRTRGT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01299 379 Pfam Ring finger domain 146 189 IPR001841 -
Bva08g01299 379 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 367 - -
Bva08g01299 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 194 IPR013083 -
Bva08g01299 379 CDD RING-H2_PA-TM-RING 146 189 - -
Bva08g01299 379 SMART ring_2 147 188 IPR001841 -
Bva08g01299 379 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Bva08g01299 379 SUPERFAMILY RING/U-box 126 195 - -
Bva08g01299 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 6 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01299 Bva-Chr8 6783291 6785265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01299 48 352 C3H Transcription Factor Family AT2G18650 40.597 1.56e-57 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01299 - - tcc:18609418 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01299 08 6783291 6785265 Bva08g01299 08 6783291 6785265 ECH
Bva08g01299 08 6783291 6785265 Bva04g00653 04 4357780 4359898 ECH