Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01273 ATGGAGGAAATGTACGGACTGCCATCGACCGGGGATATTTCTGAGAAGCCGCTGATGACCCCGGAGAATCTGCTTTTACCGGCGGATTACCAGAGCTTTTTCATGTCCTCTGGCGTGTTCCGTGATCGGATTCCGATGTTCGGATCGGAGGAGTTGCTCTCTGCTGCCTCAGCGATTACAGAAGCTGAAGCTTCTATAACTCCTGGTGCCCGGCGCGAAGAGGACGCCTCCTCCTTCATCAAAGCAAAAATTGCTTCCCATCCTTATTATCCTCGTCTCCTTCAAGCTTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAgaaattgcatgttttttaGATGAAATCCGGCGAGAAAACGACCTTTGTAAGCGAAATATTGTTTCCACGTGCTTTGGAGACGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGTGACATGCTTGTCAAATATAAATCTGATCTCGCGCGCCCTTTTGATGAAGCAGCGACGTTCCTCAACAAGATCGAAATGCAGCTCAGCGATCTCCGAACTACTGATTCTGTTCCAACACTTTTCGATGATGGGGGAGTGTCTTCAGAAGATGATTTCAGCACAGGGGATGGTGATGCTCAAGATTGTCAGTCACGGGGTGAAGAGCGAGAGCTTAAGGATAGGCTTCTACGCAAGTTCGGGAGTCACATTAGTACTTTGAAGATGGAGttctcaaagaagaaaaagaagggtaAACTACCAAAAGAAGCCAGGCAAATGCTGCTTGAGTGGTGGAATGTTCATTACAAATGGCCATACCCAACGGAAGCTGATAAGATCGCACTGGCTAAGTCAACAGGGCTAGATCAGAAGCAAATTAACAATTGGtttataaatcaaagaaagcgTCACTGGAAGCCATCTGAGAACATGCAATTTTCAATGATGGATAGTCTTACTGGACGATTCTTTACTGATGAATG 959 0.4484 MEEMYGLPSTGDISEKPLMTPENLLLPADYQSFFMSSGVFRDRIPMFGSEELLSAASAITEAEASITPGARREEDASSFIKAKIASHPYYPRLLQAYIDCQKVGAPPEIACFLDEIRRENDLCKRNIVSTCFGDDPELDEFMETYCDMLVKYKSDLARPFDEAATFLNKIEMQLSDLRTTDSVPTLFDDGGVSSEDDFSTGDGDAQDCQSRGEERELKDRLLRKFGSHISTLKMEFSKKKKKGKLPKEARQMLLEWWNVHYKWPYPTEADKIALAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMDSLTGRFFTDE 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01273 319 Pfam ELK domain 216 237 IPR005539 GO:0003677
Bva08g01273 319 SUPERFAMILY Homeodomain-like 237 311 IPR009057 -
Bva08g01273 319 MobiDBLite consensus disorder prediction 191 213 - -
Bva08g01273 319 ProSiteProfiles 'Homeobox' domain profile. 236 299 IPR001356 GO:0003677
Bva08g01273 319 Pfam Homeobox KN domain 256 295 IPR008422 GO:0003677|GO:0006355
Bva08g01273 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 318 - -
Bva08g01273 319 Pfam KNOX1 domain 80 121 IPR005540 GO:0003677|GO:0005634
Bva08g01273 319 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Bva08g01273 319 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Bva08g01273 319 CDD homeodomain 248 300 IPR001356 GO:0003677
Bva08g01273 319 Gene3D - 234 309 - -
Bva08g01273 319 Pfam KNOX2 domain 132 177 IPR005541 GO:0003677|GO:0005634
Bva08g01273 319 ProSiteProfiles ELK domain profile. 216 236 IPR005539 GO:0003677
Bva08g01273 319 ProSitePatterns 'Homeobox' domain signature. 274 297 IPR017970 GO:0000981|GO:0006355
Bva08g01273 319 SMART HOX_1 238 303 IPR001356 GO:0003677
Bva08g01273 319 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 318 - -
Bva08g01273 319 SMART ELK_2 216 237 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01273 Bva-Chr8 6650791 6658069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01273 1 319 Homeobox Transcription Factor Family AT1G23380 65.957 1.54e-144 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva08g01273 KNOX2 4.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01273 - - vvi:100246480 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01273 08 6650791 6658069 Bva11g01168 11 12672449 12687703 BWGD
Bva08g01273 08 6650791 6658069 Bva08g01273 08 6650791 6658069 ECH