Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01244 ATGGCTCTCCTACTTGGGGGATTACATCCTCAGTTACTGTCTTCGATCCTTCATCAACATAGAAAGCCTGCTATCAAATTGTCTCACCTGCGCAGCTTCCCTTTTGCGGCTAAAAATAGAATTCGAGTTGTCTTGTCCAATGATCGATTCAATTCCAGAAGCATTATTGTAAAATCAGCGTCTGTGAATGGGGTTTCGATTCAGAAAAATCCAGAAGGTTTAATCGAAGGCCGTAGAGATGACAATGTTGTACTTCTGGAGAGCCTTCGCAGATGGGCTAGTTTGCTTCCTTCGATTTTGCCTGGTGGTAGTTGGTGGAGCTTCTCCGATGACGTTGAGGTTAAGATTTTAGCTAAGCCTGTAACTGTGTGGCGCGCGCTTTCCAAAATGTGGGAACTAGTTGCTCAAGACCGATGGGTTATTATGGCGGCATTCTCTGCTCTAATTCTTGCTGCGGTTTCGGAGATTTCCATACCACATTTCTTGACAGCATCCATCTTCTGCGCACAGGGTGGGGAAATTGCAGTTTTCCATCGGAATGTGCGTCTCTTGGTTCTATTGTGTATAACTGCGGGAATATGCAGTGGGATACGAGGTTGCTGTTTTGGCATTGCAAACATGATTTTGGTTCAGAAAATGAGGGAAAAATTATACTCCTCCCTTCTACTTCAGGACATATCATTTTTTGACACTGAGACAGTTGGTGATTTGACAAGTAGGCTAGGGGCAGATTGTCAACAAGTATCACGTGTTATAGGAAATGATCTTAACATGATATTGCGCAATGTTCTTCAGGGGACAGGTGCATTGGTCTACTTGCTGATTTTGTCTTGGCCACTGGGTTTATGTACAATGATGATATGCTTTATGTTATCCGCAATTATGCTACGTTATGGAAGGTACCAGAAAAAGGTTGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCAAatgaaGTAGCTCAAGAGACGTTCTCTTTGATTAGGACTGTCCGTGTTTATGgtacagaagaagaagaagtgggAAGGTACAAATTGTGGCTGGGAAAATTAGTTGACATAAGCTTGCGACAAAATGCTGCTTATGGAGTTTGGAATTTCAGTTTCAATACTCTTTATCATTCAACTCAGGTTATCGCCGTGCTGTTCGGAGGAATATTTATCCTGAAAGGTCATCTTACAGCAGAGACACTTACCAAGTTTATACTATACAGTGAatggttaattttttcaacttgGTGGGTGGGAGACAACATATCCAATTTGATGCAATCTGTTGGGGCTAGTGAAAAGGTATTCCATTTGATGGATCTCTCGCCCAGCAGTCAATTCACATCAAAAGGAAAAGAGTTGCAGAGATTAAAGGGAGATATTGAGtttagaaatatttcttttcactaCACTTCAAGGCCAACGGTACCCGTACTGCAAAATGTAAGCATTGATGTCCATCCTAGTGAGGTGGTTGCAATTGTTGGTCTTAGCGGTAGTGGAAAAAGCACATTGGTGAACCTTTTACTTCGTCTATATGAGCCAACAAATGGTCAGATCTTGATTGATGGCAACCCTCTTAACGAGTTGAACATCATGTGGTGGAGAGAGAGAATTGGATATGTGGGACAGGAACCCAAGCTCTTCCGGATGGatattagttcaaacatcAGATATGGATGCACTCGAGATGTAAAGCAGGAGGATGTTGAATGGGCTGCCAAGCAGGCCTACGCTCATGACTTCATCTCAGCACTCCCTAATGGTTATCAAACGCTAGTGGACGATGACCTATTAAGCGGGGGACAAAAGCAACGAATTGCTATTGCTCGGGCCATTCTTAGAGatccaaaaatattgattcttGATGAAGCCACCAGTGCACTGGATGCTGAGAGTGAGCATAATGTCAAGGGTGTTCTTCGTGCAGTAAGAAGTGACTTGACGTCAAGGAGAAGTGTCATAGTCATCGCACACAGGCTTTCTACCATACAAGCAGCTGATAGGATTGTAGTAATGGATAATGGTCGAGTTGTTGAGAATGGGAGCCACAGAGaacttcttttaaaagatGGCCTGTATGCAAGACTGACTAGAAAGCAGGCTGATGCCGTGGCATG 2108 0.4156 MALLLGGLHPQLLSSILHQHRKPAIKLSHLRSFPFAAKNRIRVVLSNDRFNSRSIIVKSASVNGVSIQKNPEGLIEGRRDDNVVLLESLRRWASLLPSILPGGSWWSFSDDVEVKILAKPVTVWRALSKMWELVAQDRWVIMAAFSALILAAVSEISIPHFLTASIFCAQGGEIAVFHRNVRLLVLLCITAGICSGIRGCCFGIANMILVQKMREKLYSSLLLQDISFFDTETVGDLTSRLGADCQQVSRVIGNDLNMILRNVLQGTGALVYLLILSWPLGLCTMMICFMLSAIMLRYGRYQKKVARLIQEVTASANEVAQETFSLIRTVRVYGTEEEEVGRYKLWLGKLVDISLRQNAAYGVWNFSFNTLYHSTQVIAVLFGGIFILKGHLTAETLTKFILYSEWLIFSTWWVGDNISNLMQSVGASEKVFHLMDLSPSSQFTSKGKELQRLKGDIEFRNISFHYTSRPTVPVLQNVSIDVHPSEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDGNPLNELNIMWWRERIGYVGQEPKLFRMDISSNIRYGCTRDVKQEDVEWAAKQAYAHDFISALPNGYQTLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRAVRSDLTSRRSVIVIAHRLSTIQAADRIVVMDNGRVVENGSHRELLLKDGLYARLTRKQADAVA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01244 702 SUPERFAMILY ABC transporter transmembrane region 129 437 IPR036640 GO:0005524|GO:0016021
Bva08g01244 702 SMART AAA_5 484 673 IPR003593 -
Bva08g01244 702 PIRSF ABC_prm/ATPase_B 25 702 - -
Bva08g01244 702 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 82 701 - -
Bva08g01244 702 ProSitePatterns ABC transporters family signature. 595 609 IPR017871 GO:0005524
Bva08g01244 702 PANTHER ABC TRANSPORTER B FAMILY 82 701 - -
Bva08g01244 702 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 143 423 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva08g01244 702 CDD ABC_6TM_TAP 144 431 - -
Bva08g01244 702 Gene3D ABC transporter type 1, transmembrane domain 124 443 IPR036640 GO:0005524|GO:0016021
Bva08g01244 702 Pfam ABC transporter 475 623 IPR003439 GO:0005524
Bva08g01244 702 Pfam ABC transporter transmembrane region 177 409 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva08g01244 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 449 697 IPR027417 -
Bva08g01244 702 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 457 696 IPR003439 GO:0005524
Bva08g01244 702 Gene3D - 447 701 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01244 Bva-Chr8 6479694 6485127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01244 212 700 Calmodulin-binding Proteins AT2G36910 34.538 7.17e-74 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01244 - - gmx:100775951 1055.43