Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01235 ATGGAAGAAGCGCTTAGGCGGCTGAACGGGATGGCTCCGATTCCAGAACCCGACCCTGTGGACTGTGTTCCCGACCACCAGAAGAAGTGCGCAACCGCAGCTGCAGCATCCACTAACAAGAGGACCTTGAGGGAAAACGGCGCTGGCTCTGGCGGCACTATGAGGTACCGCGGAGTTCGGCGCAGGCCATGGGGTCGTTACGCCGCCGAGATAAGGGACCCGCAATCGAAGGAGCGTCGCTGGCTCGGAACCTTCGACACGGCTGAGGAAGCCGCCTGCGCTTACGATTGCGCTGCCCGAGCCATGCGTGGCCTTAAAGCTCGAACTAATTTTGTCTACCCAAATTCGCCGCCGCACTCCTCCAACGACCACCACCTTTTCACTCCCTTCAACTTCCCTAAACATCCTCAGCTGCCCATCAACAAAAACCAGAATAACCGCCACTTGGGAGCTTCAGGTTCTAATTGGTCTTACTCCAACCCTCATGTGGGTGACTTTTCATCTTCCTCTGCAGTTTCGCAGAGAGGTGCATCACTGAACATGCTTCTGCTTCGAGATTTCCtcaactcttcttcttctaaccCATCTTTGATTTCTTCCCCTCAGCCTTTTTACGAACAGTTTCCCTACAACAATGGTTCATCTTCCTTGCCATCATCTACTTGTTGTTCATGTGCTTCTTCATCACCGTTACACATCTCTAGTGGCTTCTCTGCTTGCTGTTTGGTGAATTCTTGTAACGGCGTTGTTGGGTCATCTTCCAACGCGTTGAATCACACTCACCAAAATTGTGAAGTAAAGAGTTCTGAAACTGACAATGACTCGGAGTTCTTTCCCAGAGAGCCTTCAGACTCAGGACTGTTGGAAGAGGTCATTAGTAGGTTCTTTCCAAATTCAAAGTCCAAGAAACGTGAGAGCAGTCCACCAAAGACAGAGACTTTGTCCTTCTCCGAGTCACTTCCTCCGCTGCCGTTGACTGACATGTTCGTTTCCACCACTCAGGGCTATGATGAGACGAGGAGGGGGTTTACGACGAATGAACCATTTGTTGTCTCTCTTGATCAACAAGGCTTACCCATGCAGCAATTTGATAGCTTCAATGGGTTTAACCCCACGCAGGCCATGGAATACGGGAGTGATCAGCTAATGTTGATGAGTGACTTGGACTGTTCTATGGTGGGAGATGTTTTTCAGCACTCTGATCTTCTGACTTCTTTTGCAGCCAGGATGCAAAACGCTTa 1241 0.4956 MEEALRRLNGMAPIPEPDPVDCVPDHQKKCATAAAASTNKRTLRENGAGSGGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPNSPPHSSNDHHLFTPFNFPKHPQLPINKNQNNRHLGASGSNWSYSNPHVGDFSSSSAVSQRGASLNMLLLRDFLNSSSSNPSLISSPQPFYEQFPYNNGSSSLPSSTCCSCASSSPLHISSGFSACCLVNSCNGVVGSSSNALNHTHQNCEVKSSETDNDSEFFPREPSDSGLLEEVISRFFPNSKSKKRESSPPKTETLSFSESLPPLPLTDMFVSTTQGYDETRRGFTTNEPFVVSLDQQGLPMQQFDSFNGFNPTQAMEYGSDQLMLMSDLDCSMVGDVFQHSDLLTSFAARMQNA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01235 413 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Bva08g01235 413 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Bva08g01235 413 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Bva08g01235 413 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Bva08g01235 413 CDD AP2 55 111 IPR001471 GO:0003700|GO:0006355
Bva08g01235 413 MobiDBLite consensus disorder prediction 299 318 - -
Bva08g01235 413 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677
Bva08g01235 413 SMART rav1_2 55 120 IPR001471 GO:0003700|GO:0006355
Bva08g01235 413 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Bva08g01235 413 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 413 - -
Bva08g01235 413 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01235 Bva-Chr8 6438449 6439150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01235 53 324 AP2-EREBP Transcription Factor Family AT1G24590 38.489 3.68e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva08g01235 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01235 - - tcc:18609569 331.643