Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01228 ATGGAATTTGAGGATCAAGAAGAACAAGAGGAAGAGTTGGGCATGGCGGCAGCGAGTTACGACTCGTTGGGGAACTCGTCCCGAGTAAGAATGCCGAACTTGGTAGTTGCCGGAGGAGGAGAAGTGATGCTGGCACAGCCAACGAGAATTGGTAACAGCAAGGGCAGGTACAGAGAGTGCTTGAAGAACCACGCAGTGAGTATTGGTGGACATGCGCTCGATGGGTGCGGAGAGTTCTTGGCTGCTGGAGCCGAAGGCACACTTGATGCTCTGAAATGCGCTGCCTGTAACTGCCACCGAAATTTCCATCGTAAAGAGACCGACTCAATCGGCGGCGGAGTGGCAGGAGACTCGTATTTTTTGACCCATCACCCGCACCCACACCCTGCCCAGTACGCAGCTTATTATCGAACGCCGGCTGGGTACTTGCACGTGGCGGGACAACAGAGGGGAACAGCGACGCTGGCGTTGCCGTCGACATCGGGAGCAGGTGGTGGTGGGGGCGGGACCCAGAGTACTCGAGATGATCAAGAAGACGTTTCGAACCCAAGTGCAGGAGGGTCCAAGAAGAGGTTCAGGACAAAGTTCACGCAGGAACAGAGAGACAAAATGCTGGCTTTGGCTGAGAGATTGGGTTGGAGGATTCAGAAGCACGACGAGACTGTGGTTCAGGAGTTCTGTAACGAAACGGGTGTGAAGCGTCATGTTCTTAAGGTTTGGATGCATAATAACAAGCATACTCTTGGTAAGAAGCCCTA 758 0.5369 MEFEDQEEQEEELGMAAASYDSLGNSSRVRMPNLVVAGGGEVMLAQPTRIGNSKGRYRECLKNHAVSIGGHALDGCGEFLAAGAEGTLDALKCAACNCHRNFHRKETDSIGGGVAGDSYFLTHHPHPHPAQYAAYYRTPAGYLHVAGQQRGTATLALPSTSGAGGGGGGTQSTRDDQEDVSNPSAGGSKKRFRTKFTQEQRDKMLALAERLGWRIQKHDETVVQEFCNETGVKRHVLKVWMHNNKHTLGKKP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01228 252 MobiDBLite consensus disorder prediction 155 191 - -
Bva08g01228 252 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 189 245 IPR006455 -
Bva08g01228 252 Pfam ZF-HD protein dimerisation region 56 107 IPR006456 -
Bva08g01228 252 MobiDBLite consensus disorder prediction 155 188 - -
Bva08g01228 252 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 251 - -
Bva08g01228 252 SUPERFAMILY Homeodomain-like 181 250 IPR009057 -
Bva08g01228 252 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 56 106 IPR006456 -
Bva08g01228 252 Gene3D - 173 250 - -
Bva08g01228 252 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 45 251 - -
Bva08g01228 252 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 106 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01228 Bva-Chr8 6380491 6381926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01228 1 248 ZF-HD Transcription Factor Family AT4G24660 50.800 1.72e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Bva08g01228 ZF-HD_dimer 4.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01228 - - csv:101204784 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01228 08 6380491 6381926 Bva11g01208 11 12890102 12891558 BWGD