Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01204 ATGGCGAGAGCAACTCATTGGCTATCGTTTGCTTCGCCGGAAATGCTGAGGCCCTCAGAACCTCAGTTTGTTCAATACGACAGCTCGTCTGCTACCTCTCACTACTTCGTCGACAACTACTTTGCGAACGGCTGGGCAAATCCCAAGCCTCAGGTTCTGTACACACCATTAGAGCAAAACCAGAACAAAGAAAGCCAACCACAGAGCATGGCGGAATCATCCATTCTCACTAGCTTCATGGACCCACGCCATCAAAACCAACAAGTTCccaaatttgaagattttctCGGCGGTGATTCTTCCTCCATCATGCGCTACTCTGACAGCCAAACGGAGACTCAGGATTCCTCGCTCACTCAGATATACGATCATGGCTCTGGCTATTTCAATGACCAGCAGGATCTGAAAGCAATTGCTGGCTTTCAAGCTTTCTCCACCAACTCGGGTTCTGAAGTCGATGACTCAGCCTCAATCGCCAAAACTCATACTACTGGTACCGATTTCGCAACTCGCTCCATTGATTCATCAGGGAACGAGTTGCCCTTCTCTGGCTGCGCCACCGCTGGTGCTTTGTCTCTCGGCGTCACTCAAACTTCAGACAAGGCGATCATGGCGGCGGATTCCGATTCGTCCAAGAAGGCAGCTGATTCCTTTGGCCAGCGAACTTCGATTTACAGAGGAGTCACCAGACATAGATGGACGGGTAGATACGAAGCGCATCTTTGGGACAACAGCTGTAGAAGAGAGGGCCAGGCAAGGAAAGGGCGTCAAGTGTATTTGGGTGGTTatgacaaggaagaaaaggCAGCAAGATCTTATGATTTAGCAGCTCTAAAGTACTGGGGCCCCACCGCTACCACCAACTTCCCTGTTTCCAactatacaaaggaattggAGGACATGAAACACGTAACGAAGCAAGAGTTTATTGCATCACTGCGAAGGAAAAGTAGTGGTTTTTCACGGGGAGCTTCTATATACAGGGGTGTGACGAGGCATCATCAGCAAGGTAGATGGCAAGCAAGAATTGGTCGTGTTGCTGGCAACAAAGATCTATACCTTGGAACATTCGCTACTGAGGAAGAAGCAGCAGAGGCATACGATATTGCAGCCATAAAGTTCAGAGGAGCCAATGCTGTAACCAATTTTGAGATGAGCAGATATGACGTTGATGCTATCATCAATAGTTCTCTTCCAATTGGCGGAGCTGCAAAAAGGTTGAAGCTTTCCCTGGAATCAGAGCAGAAGACTCCTGTGAACAGGAACCACCAGGATCAGTGTAGAAACGTGAATGGCAGCATCAATTTCTCAGCCATTCAGCCAGTTGCTCCTATCCCATGTGGAATTCCCTTTGATCCTGCAACATCTTACTATCACCCCAACGTCTTCCACCATTATCTACCAAGTCGCACGACCACTGCGGAGTCTGCTGTATCTACCACCACCACCGCAGCTCCATTGACAGCAGTGCCACCGGCAGCAGCAGCTCCGGAGTTTTTCATGTGGCCTCACCAGTCTTATTG 1523 0.478 MARATHWLSFASPEMLRPSEPQFVQYDSSSATSHYFVDNYFANGWANPKPQVLYTPLEQNQNKESQPQSMAESSILTSFMDPRHQNQQVPKFEDFLGGDSSSIMRYSDSQTETQDSSLTQIYDHGSGYFNDQQDLKAIAGFQAFSTNSGSEVDDSASIAKTHTTGTDFATRSIDSSGNELPFSGCATAGALSLGVTQTSDKAIMAADSDSSKKAADSFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSNYTKELEDMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMSRYDVDAIINSSLPIGGAAKRLKLSLESEQKTPVNRNHQDQCRNVNGSINFSAIQPVAPIPCGIPFDPATSYYHPNVFHHYLPSRTTTAESAVSTTTTAAPLTAVPPAAAAPEFFMWPHQSY 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01204 507 PRINTS Ethylene responsive element binding protein signature 366 386 IPR001471 GO:0003700|GO:0006355
Bva08g01204 507 PRINTS Ethylene responsive element binding protein signature 225 236 IPR001471 GO:0003700|GO:0006355
Bva08g01204 507 CDD AP2 223 292 IPR001471 GO:0003700|GO:0006355
Bva08g01204 507 ProSiteProfiles AP2/ERF domain profile. 326 384 IPR001471 GO:0003700|GO:0006355
Bva08g01204 507 CDD AP2 325 386 IPR001471 GO:0003700|GO:0006355
Bva08g01204 507 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 29 504 - -
Bva08g01204 507 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 29 504 - -
Bva08g01204 507 SMART rav1_2 326 390 IPR001471 GO:0003700|GO:0006355
Bva08g01204 507 SMART rav1_2 224 296 IPR001471 GO:0003700|GO:0006355
Bva08g01204 507 SUPERFAMILY DNA-binding domain 325 386 IPR016177 GO:0003677
Bva08g01204 507 SUPERFAMILY DNA-binding domain 223 292 IPR016177 GO:0003677
Bva08g01204 507 Pfam AP2 domain 326 376 IPR001471 GO:0003700|GO:0006355
Bva08g01204 507 Pfam AP2 domain 224 282 IPR001471 GO:0003700|GO:0006355
Bva08g01204 507 Gene3D AP2/ERF domain 224 292 IPR036955 GO:0003700|GO:0006355
Bva08g01204 507 Gene3D AP2/ERF domain 326 386 IPR036955 GO:0003700|GO:0006355
Bva08g01204 507 ProSiteProfiles AP2/ERF domain profile. 224 290 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01204 Bva-Chr8 6243045 6247910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01204 45 507 AP2-EREBP Transcription Factor Family AT5G10510 56.856 1.83e-178 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bva08g01204 AP2 5.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01204 K09285 - vvi:100854470 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01204 08 6243045 6247910 Bva11g01229 11 13001162 13005930 BWGD