Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01191 atgaagaaggtaGGTGAGATAAGCAACTGGGTTTTCTTCCTGTGGTGGCTTGGAATGACCCTGCAGCTCTGCTTCTTGCTGGGTGGTTGTTCTGAGACGACTTCCGTTAGAAGATATTTAAGGGAGCTTGAGAGTGCAGAACCGCCTACTTCTCTTCCTGCAGTCACGCTCAATGATTCCGATCATCAACAGGTGGTGATTGACAATGGCATTGTTCGCGTCACTTTGTCAAAGCCAGAAGGTTATGTGCTTGGAATATCATATAAAGGGATTGACAATGTACTTGAACCTAATGAAGATAACAATAGAGGGTATTGGGACGTTGTTTGGGAAGAACCAGGAACCGAAAGCAGCTTTAAGAAATCCAAAGGCGCCAAATTTTCAGTCGTAGTAGCAAACAGGGATCAAATAgagctttcattttcaacGAATTGGACATCTTCCACGAAAGGCTCAAGTGTTCCTATGAACATGGACAAAAGGTATATATTACGTCGAGGTGATTCAGGATTTTATGCATATGCAATATTTGAACGCTTAGAAGGAATGCCAGCAGTggaaattgatcaaattagGCTTGTCTTCAAGCTCCAGCAAGACAGGTTCAAATATATGGCTATATCAGACAATAGGCAAAGAGACATGCCAACCTCGGAAGATAGACAAAGAGGAAAGCGCCTTGCATACAAAGAAGCTGTTCTCTTAACTAATCCAAGCAACCCAGAATTCAAAGGAGAGGTGGATGACAAGTACCAATACTCGAGTGAGAATAAAGACAACTCTGTTCAAGGATGGATTAACTTTGATTCTGATTCACCCGTGGGCTTCTGGATAATAACACCAAGCAATGAATTCCGTAATGGTGGACCTATCAAGCAAGATCTCACCTCCCATGTTGGCCCCACCGCCCTCTCCATGTTTGTCAGCACCCACTATGCTGGGAAGGAGGTAACCATGGCGTTTGAACAAGGGGAGACTTATAAAAAGGTTTTTGGCCCTATTTTTGTCTACCTCAACTCTgcttcaaacaaaaataacagtGTTCCAGCTTCACAACCGCTATGGAGAGACGCTGTACAACAGATGACTAAGGAATCCCAAAACTGGCCCTATGATTTCCTTCAATCACAAGATTTCATTCCACCAAAGCAACGTGGAACTGTCTTGGGACGATTACTAGTCCAGGATGGgTACACCCAAGGAGGCAGATTTCTGTATGCTAGATCTGCTTATGTTGGTCTTGCTCTGCCTGGAGAACCGGGATCTTGgcaaaaagaaagcaagGGTTACCAATTCTGGACACGAGCTGACATGATGGGCGACTTCGTACTGAAAAATATAGTACCTGGGAACTATAATTTGTATGCATGGGTTCCTGGCTTTCTCGGAGATTACATGTATAAAGCTACCATTACCATCACACCAGATCGGTCAGCAGCAGAGTTCCATGTACCAGAGCCTTACCCTACTCTCATGAATAGACTGTACGCTGACAACAACAAAGAAAGGTTTAGGCAATATGGTTTGTGGGAACGTTATACTGATTTGTATCAGAATGGTGACCTCGTTTACACCATTGGTGTTGATAATTATCACAAACATTGGTTCTACGCCCACGTTACCAgGAGCACAGGAAATAATACGTATGAATCAGCCACTTGGCAGATTGTTTTTGATCTCCCAAATGTAGCAGAGGGTGGAAATTACACGTTACAAATGGCCTTGGCATCAGCCACATATTCGCACTTGGAGGTTCGGTTCAATGATCCAAGTGTTTTACCTGCTCACTTCACAACGGGTCTAATAGGGGAAGACAACGCCATAGCAAGGCACGGTCTCCATGGATTGCATTGGTTGTTCAGCATTGATGTGCCTAGCAGTCGATTAGTAGAAGGAAAGAACACCATCTATCTAAAACAGTCAAAAGCCACAGATGCTTTCCAAGGAGTTATGTATGACTATATTCGTTTAGAAGGACCTTCATCTCCGAGGACTTA 1997 0.4216 MKKVGEISNWVFFLWWLGMTLQLCFLLGGCSETTSVRRYLRELESAEPPTSLPAVTLNDSDHQQVVIDNGIVRVTLSKPEGYVLGISYKGIDNVLEPNEDNNRGYWDVVWEEPGTESSFKKSKGAKFSVVVANRDQIELSFSTNWTSSTKGSSVPMNMDKRYILRRGDSGFYAYAIFERLEGMPAVEIDQIRLVFKLQQDRFKYMAISDNRQRDMPTSEDRQRGKRLAYKEAVLLTNPSNPEFKGEVDDKYQYSSENKDNSVQGWINFDSDSPVGFWIITPSNEFRNGGPIKQDLTSHVGPTALSMFVSTHYAGKEVTMAFEQGETYKKVFGPIFVYLNSASNKNNSVPASQPLWRDAVQQMTKESQNWPYDFLQSQDFIPPKQRGTVLGRLLVQDGYTQGGRFLYARSAYVGLALPGEPGSWQKESKGYQFWTRADMMGDFVLKNIVPGNYNLYAWVPGFLGDYMYKATITITPDRSAAEFHVPEPYPTLMNRLYADNNKERFRQYGLWERYTDLYQNGDLVYTIGVDNYHKHWFYAHVTRSTGNNTYESATWQIVFDLPNVAEGGNYTLQMALASATYSHLEVRFNDPSVLPAHFTTGLIGEDNAIARHGLHGLHWLFSIDVPSSRLVEGKNTIYLKQSKATDAFQGVMYDYIRLEGPSSPRT 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01191 665 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Bva08g01191 665 SUPERFAMILY Starch-binding domain-like 381 477 IPR013784 GO:0030246
Bva08g01191 665 Gene3D - 479 658 - -
Bva08g01191 665 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 475 662 - -
Bva08g01191 665 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 59 475 - -
Bva08g01191 665 Pfam Polysaccharide lyase family 4, domain II 408 478 IPR029413 -
Bva08g01191 665 SUPERFAMILY Galactose-binding domain-like 474 658 IPR008979 -
Bva08g01191 665 Gene3D - 54 355 IPR014718 GO:0030246
Bva08g01191 665 CDD RGL4_N 64 347 - -
Bva08g01191 665 Gene3D - 380 478 - -
Bva08g01191 665 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 475 662 - -
Bva08g01191 665 CDD RGL4_M 384 480 IPR029413 -
Bva08g01191 665 CDD RGL4_C 474 658 - -
Bva08g01191 665 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 59 475 - -
Bva08g01191 665 SUPERFAMILY Galactose mutarotase-like 61 348 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bva08g01191 665 Pfam Rhamnogalacturonate lyase family 53 247 IPR010325 -
Bva08g01191 665 Pfam Polysaccharide lyase family 4, domain III 474 657 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01191 Bva-Chr8 6166965 6170831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01191 64 661 Polysaccharide Lyase AT1G09890 54.226 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01191 K18195 - gmx:100776664 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01191 08 6166965 6170831 Bva11g01247 11 13094625 13100159 BWGD