Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01179 ATGGAGCAGCTTGCTCAACTTGGTTTTCTGGAAGAACTATTGGCTCCCAGAAGAGACACTTGGAACACTTTGCCCACTGGGTTAAGTGAGCTATTGCCTAATGGTTGGAGCTTTGACTCTTTTGATGAAGAACCATCTCTAGCTACCTTAAATCCTTCATTTGCTGCACTTTCAACACCAATAGACCATAGATTTGAATGCCTTTATGGTGGTGAAGTAGCATACCCTTTTGTTGATGGTTTCACAATGCCTGAGCTTGATGCATCTTACACCAGGAATGAAGACTCAGCACTACTTCCAGCACAAGAGGATGATAACCCATCAATGGAGGATGAAGAGCTTGGCTTTCTGGGCAAAGAAAATCAACAGGggtttgaagaaagaaagaatgccTGCAAAATTGAGGAACAAACTACTGAAATTCCAGTCTTCAACATGGGCTTGTGTGGAGATAAAAAAGCTAAGTCCAAGAAGCTGGATGGGCAGCCCTCTAAAAATCTCATGGcagaaagaaggagaaggaagCGCCTGAATGACCGTCTTTCCATGCTAAGATCTATAGTCCCAAAGATAAGCAAGATGGACAGGACCTCTATTCTTGGAGACACCATAGATTACATGAAAGAGCTTCTTGAAAGAATAGGTAAGTtgcaagaagaagaggaagcagGAGAGAGTTCAAATCAGATAAACCTGTTGGGCATTTCCAAGGAgctgaagccaaatgaagcCATGGTAAGAAATTCCCCCAAGTTTGATGTTGATAGGAGCGACCAGGACACAAGAATCAGCATCTGCTGTGCAGCAAAGCCTGGATTGTTACTGTCAACCGTGAACACATTGGAAGCATTAGGCCTTGAGATTCAGCAATGCGTTATAAGTGGCTTCAATGACTTTTCATTACAAGCATCTTGCTCAGAgGTAGCAGAACAGAGATCATGCACCAGCTCTGAAGATATAAAGCAAGCAATATTCAGAAATGCAGGTTATGGTGGGAGATGTCTGTA 1007 0.3932 MEQLAQLGFLEELLAPRRDTWNTLPTGLSELLPNGWSFDSFDEEPSLATLNPSFAALSTPIDHRFECLYGGEVAYPFVDGFTMPELDASYTRNEDSALLPAQEDDNPSMEDEELGFLGKENQQGFEERKNACKIEEQTTEIPVFNMGLCGDKKAKSKKLDGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEEAGESSNQINLLGISKELKPNEAMVRNSPKFDVDRSDQDTRISICCAAKPGLLLSTVNTLEALGLEIQQCVISGFNDFSLQASCSEVAEQRSCTSSEDIKQAIFRNAGYGGRCL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01179 335 Gene3D - 150 211 IPR036638 GO:0046983
Bva08g01179 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Bva08g01179 335 PANTHER - 3 335 - -
Bva08g01179 335 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 335 - -
Bva08g01179 335 MobiDBLite consensus disorder prediction 154 175 - -
Bva08g01179 335 SMART finulus 167 216 IPR011598 GO:0046983
Bva08g01179 335 CDD ACT_UUR-ACR-like 261 302 - -
Bva08g01179 335 Coils Coil 207 227 - -
Bva08g01179 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 225 IPR036638 GO:0046983
Bva08g01179 335 Pfam Helix-loop-helix DNA-binding domain 167 210 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01179 Bva-Chr8 6070708 6072388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01179 151 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.817 5.71e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva08g01179 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01179 - - gmx:100806571 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01179 08 6070708 6072388 Bva11g01258 11 13167283 13169132 BWGD