Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01163 ATGACCGAGTATCGGTTGCCGCCGACGATGAATCTTTGGGATGACAACTCATCGGTGATGGAGGCTTTTATGAGCTCTGATCTATCTTCCTTGTGGCCTCCACCACCGCAGCCGCAATCCTCTGCCTCCACGACAACGCCTGGGCCTGACCCCACAAAAGCTCTTATTCAAACTCAGCCGCAGGTTGCTCTCTTCAGCCAGGAGACTCTTCAGCAGCGGCTTCAAGCGCTGATTGAGGGTGCTAGGGAGAGCTGGACCTACGCCATCTTCTGGCAGTCATCATATGATTATTCCGGAGCCTCGGTGTTAGGTTGGGGTGATGGTTACTATAAAGGGGAAGATGATAAGTCGAAAGGCAAGGTCAAATCGATGTCGTCTGACGCCGAGCAGAACCATCGGAAGAAGGTTCTCCGTGAGCTGAATTCGCTTATTTCTGGGTCATCAACAGCCCCTGACGATGCCGTCGATGAAGAAGTCACGGACACGGAGTGGTTCTTTCTCGTTTCTATGACTCAGTCGTTTGTGAGCGGCGGCGGATTGCCGGGCCAAGCGTTTTTCAATTCGAGCCCCATTTGGATCATTGGTGGGGACCGTTTAGTAGCCTCGACGTGCGAGAGAGCGAGGCAAAGCCAGGTGTTTGGGCTTCAGACCTTGGTTTGCATACCGTTGGCGAATGGGGTTGTGGAACTAGGTTCCACCGAgctcatttttcaaaattccgATTTGATGAATAAGGTGCgggttttattcaattttgatAATCTAGAAGTGGGTTCGTGGCCCCTGGCTGGTGGTGCGGATCAGGGCGAGAACGATCCATCTTCACTTTGGCTTAACGATCCCTCTGAAATCAGAGAATCGGACAACAATGTTGTTCCAGCGTCAGTTCCGAGCTCAAATCATAATAATACCAATCAGACAATTTCAAAGTCGATTCAGTTCGACACTCCAGGTTCCAGTACTTTAACGGAAGCCCCAAGTGCCATTCATATTCCAAGCACTCCCCAGAGTCACCCGCAACGACAACAGCCGCAGCAATCACAGACACAGGGTTTCTTTTCTAGGGAATTGAACTTTTCCGATTATGCTTATGAGGGCAATGGCGTGAAGAAAAGCAACTCGCATTCTTTAAAGCCGGAATCAGgtgagattttgaattttggggAGAGCAAGAAAAACTCTTATGGGGCAAATGGAAATTTGTTCTCTGGTCATTCCCAATTCGTTCCTGAGGACAACAAAAAGAGGAGGTCGCCAACATCCAGGGGTAGTAATGACGAAGGTATGCTTTCGTTTACTTCTGGTGTGATTTTGCCAGCTTCAACTATGAAGTCCAGTGGTGGCGGCGGCGGTGCTGATTCTGACCACTCCGATCTTGAAGCTTCAGTGGTAAAGGAGGCTGACAGTAGCAAAGTAGTTGAACCAGAAAAACGACCTCGGAAAAGAGGCAGAAAGCCAGCAAATGGCAGAGAAGAGCCTCTGAATCATGTTGAAGCAGAGAGGCAGAGGAGGGAGAAGCTGAATCAAAGGTTCTACTCTCTTCGAGCAGTGGTTCCAAATGTGTCAAAGATGGACAAAGCATCCCTTCTGGGTGATGCTATCTCTTACATTAATGAGCTCAAATCGAAACTTCAGAGTCTAGAATCAGACAAGGaggaattgaagaaagaattggATTCAGTAAAGAAGGAACTTGAATTGGCCAACAAAGAATCAGGCTATGCGGGTTCGGGGCCACCTCCATCAGACAAAGACCTCAATCTCCTTGGAAGCAAGCTAATAGATTTAGACATTGACGTGAAGATTATCGGTTGGGATGCCATGATTCGAATCCAATGTAGCAAGAAAAACCACCCTGCAGCGAGGTTGATGGCAGCTCTGAAGGAGCTAGACCTAGATGTCCACCATGCAAGCGTGTCGGTAGTGAATGATTTGATGATCCAACAAGCGACAGTAAAGATGGGAAGCAGATTTTACACGCAGGAGCAGCTCCGGTTAGCACTGTCGTCCAAAGTTGGCGATGTCCGATA 2030 0.4714 MTQSFVSGGGLPGQAFFNSSPIWIIGGDRLVASTCERARQSQVFGLQTLVCIPLANGVVELGSTELIFQNSDLMNKVRVLFNFDNLEVGSWPLAGGADQGENDPSSLWLNDPSEIRESDNNVVPASVPSSNHNNTNQTISKSIQFDTPGSSTLTEAPSAIHIPSTPQSHPQRQQPQQSQTQGFFSRELNFSDYAYEGNGVKKSNSHSLKPESGEILNFGESKKNSYGANGNLFSGHSQFVPEDNKKRRSPTSRGSNDEGMLSFTSGVILPASTMKSSGGGGGADSDHSDLEASVVKEADSSKVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQSLESDKEELKKELDSVKKELELANKESGYAGSGPPPSDKDLNLLGSKLIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALKELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALSSKVGDVR 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01163 507 CDD bHLH_AtAIB_like 319 395 - -
Bva08g01163 507 Gene3D - 314 402 IPR036638 GO:0046983
Bva08g01163 507 SMART finulus 328 377 IPR011598 GO:0046983
Bva08g01163 507 Coils Coil 368 402 - -
Bva08g01163 507 MobiDBLite consensus disorder prediction 94 181 - -
Bva08g01163 507 PANTHER TRANSCRIPTION FACTOR MYC2 1 504 - -
Bva08g01163 507 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 322 371 IPR011598 GO:0046983
Bva08g01163 507 Pfam Helix-loop-helix DNA-binding domain 326 371 IPR011598 GO:0046983
Bva08g01163 507 MobiDBLite consensus disorder prediction 103 181 - -
Bva08g01163 507 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 1 81 IPR025610 -
Bva08g01163 507 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 392 IPR036638 GO:0046983
Bva08g01163 507 PANTHER MYC 1 504 IPR045084 GO:0003700|GO:0006355
Bva08g01163 507 MobiDBLite consensus disorder prediction 293 332 - -
Bva08g01163 507 MobiDBLite consensus disorder prediction 227 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01163 Bva-Chr8 5965802 5968380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01163 1 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 53.242 6.67e-160 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva08g01163 bHLH-MYC_N 9.2e-23 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01163 K13422 - vvi:100250607 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01163 08 5965802 5968380 Bva08g01163 08 5965802 5968380 ECH