Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01162 ATGGCGTCCGAGAACTTCAACGACAAGAACGCTGTCTTCCGTAAACTTAAGGCCAAGGCAGAAAACAAGATGTGTTTCGATTGCAATGCAAAAAATCCAACCTGGGCGTCGGTCACTTATGGGATCTTCCTCTGCATCGATTGCTCAGCTGTTCACCGCAGTCTTGGCGTGCACATCAGCTTTGTGAGATCTACAAATTTAGACTCGTGGACTCCTGAGCAACTAAAAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTATTTTTTAGGCAACATGGTTGGACTGATGGTGGTAAAATAGAGGCCAAATATACATCCAGAGCTGCAGATTTGTATAGACAAATTCTTTCAAAGGAAGTAGCTAAGAGTATGGCAGTGGAGGGAGGTGTGCAATCATCAACTGCTGCTGCTCAGGCTGCACAAGCAGATGGTGGACTTCCTGAAGTCAGGACAAGTGAAGTACCAAAAGAGAACAATTCAGGGAAGCCGGAAACGCCTGAGAGCACTGCTTCTCCAAAAGCTTCACATTCAATACTTTCCAATACTGTCAAGAGGCCTATTGGTAGCAAAAAACCTGGGAAGAGTGGAGGACTTGGTGCCCGAAAGCTTACTACAAAGCCGAGTGAGTCTCTCTATGAACAGAAGCCTCAAGAACCACCACCTGTTCCAGTTTCTTCCTCAACAAACAACAATCTGGCTGCTGGGCCATCCTTCCCATCTCGGTTTGAATATGTAGAAAATGTCCAAACATCTGAGTTGAATTCTGGTGGTGCACAAGTGATTAGCCATGTGACTCCTCCTAAGTCATCAAGCTTCTTTGCAGAATTTGGAATGGATAGTGGTTTTCCAAAGAAATCTGCATCAAACTCCTCAAAAGTGCAAACTTCTGATCAGATTCAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCAAAATCTATTTCTTCAGCCCAGTTTTTTGGAGATCAGAACAAAGCAGCAGATATAGAGGCTCAAGCTactttgtcaaaattttcaGATTCAACTGCCATCTCCAGTGCTGATCTTTTTGGTCATCCATCAGATAATAACATTGATCTTAACGCAAGTGACCTAATCAATCGACTGTCTTTCCAGGCACACCAGGATATCTCTTCCCTTAAAAATATTGCAGGAGAGACGGGGAAGAAGCTCAGCTCCTTCGCCTCCACTTTGATGACGGATCTTCAAGACAGAATCCTTTA 1229 0.4353 MASENFNDKNAVFRKLKAKAENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKMMSFGGNNRAQVFFRQHGWTDGGKIEAKYTSRAADLYRQILSKEVAKSMAVEGGVQSSTAAAQAAQADGGLPEVRTSEVPKENNSGKPETPESTASPKASHSILSNTVKRPIGSKKPGKSGGLGARKLTTKPSESLYEQKPQEPPPVPVSSSTNNNLAAGPSFPSRFEYVENVQTSELNSGGAQVISHVTPPKSSSFFAEFGMDSGFPKKSASNSSKVQTSDQIQESDEARKKFSNAKSISSAQFFGDQNKAADIEAQATLSKFSDSTAISSADLFGHPSDNNIDLNASDLINRLSFQAHQDISSLKNIAGETGKKLSSFASTLMTDLQDRIL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01162 409 MobiDBLite consensus disorder prediction 284 304 - -
Bva08g01162 409 Pfam Putative GTPase activating protein for Arf 12 100 IPR001164 GO:0005096
Bva08g01162 409 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 115 IPR001164 GO:0005096
Bva08g01162 409 MobiDBLite consensus disorder prediction 284 299 - -
Bva08g01162 409 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 409 - -
Bva08g01162 409 SUPERFAMILY ArfGap/RecO-like zinc finger 11 125 IPR037278 -
Bva08g01162 409 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 409 - -
Bva08g01162 409 Gene3D Arf GTPase activating protein 1 141 IPR038508 -
Bva08g01162 409 CDD ArfGap_ArfGap2_3_like 8 123 - -
Bva08g01162 409 MobiDBLite consensus disorder prediction 154 185 - -
Bva08g01162 409 MobiDBLite consensus disorder prediction 137 239 - -
Bva08g01162 409 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Bva08g01162 409 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Bva08g01162 409 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Bva08g01162 409 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01162 Bva-Chr8 5954796 5958979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01162 13 83 C2H2 Transcription Factor Family AT3G07940 51.389 7.77e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01162 K12493 K11855 gmx:100785169 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01162 08 5954796 5958979 Bva11g01274 11 13255131 13259338 BWGD
Bva08g01162 08 5954796 5958979 Bva08g01162 08 5954796 5958979 ECH