Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01153 ATGGCGACTTTAGAATCAGCTCTCAGTGCCTTCGCAACTTATCGGTGTTCCActaagtccttttcatctccCAAACCACTGGACTCCATAAAGCTCCACCCCTCCAATTCTCATCTTACCCTTTCCCGCAATTCCATCTTCTCTTCATGCCTCTCTTCCAATAACTCCAGTGGAAAACATTGCTTTGAATTATTCTTCTCTGCGTTGCAAGAGTTAGCAACAGAAGAAAAACCTGAGGGAATCCAGGTAACAAACGTCAAGAAGAAGCTTTACGTGTTTAATCTGCCATGGTCTCTCTCGGCGGTGGACATCAAGAACCTCTTTGGCGAATGCGGAACTGTAAAAGATGTCcagataataaagaagaaagatgggAGAAGAAGAGGCTTTGCCTTTGTTACTATGGCGTCCAGGGAAGATGCCGAGGCTGCCATTAAGAAATTTCACTCTCATgaaTTATCAAGCAGGACAATAAGGGTTGAGCTTGCAAAGAGTGGACCTCCTTCTCAACGTCCTCCAGATTTCCCTGTTGACGAGACGCGCTATAAAATTCATGCAGCCAACCTTGCAAGGAAAGTAAGATCTACCCATCTCAGAGAATTCATCactgaaaatttcaaaacaccAGCTTCAGCTAGGGTTGTATTTGACGGCCCTAACGGAAGATCTACTGGATATGGATTTGTTTCTTTCGTTACAAAGGAGGAAGCAGAGGCGGCCATTTCTACTCTGAATGGGAAGGAATTAATGGGGCGACCAATTATCCTTAAATTGAGCcataaaaatgttgaaagaGCTGGGAGTGAAAAAGAGCAAGGTTATGATGGTCAAGTTGAAGAATCATA 845 0.4036 MATLESALSAFATYRCSTKSFSSPKPLDSIKLHPSNSHLTLSRNSIFSSCLSSNNSSGKHCFELFFSALQELATEEKPEGIQVTNVKKKLYVFNLPWSLSAVDIKNLFGECGTVKDVQIIKKKDGRRRGFAFVTMASREDAEAAIKKFHSHELSSRTIRVELAKSGPPSQRPPDFPVDETRYKIHAANLARKVRSTHLREFITENFKTPASARVVFDGPNGRSTGYGFVSFVTKEEAEAAISTLNGKELMGRPIILKLSHKNVERAGSEKEQGYDGQVEES 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01153 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Bva08g01153 281 PANTHER CHLOROPLAST, PUTATIVE-RELATED 8 272 - -
Bva08g01153 281 Gene3D - 69 170 IPR012677 -
Bva08g01153 281 PANTHER OS02G0815200 PROTEIN 8 272 - -
Bva08g01153 281 SMART rrm1_1 89 161 IPR000504 GO:0003723
Bva08g01153 281 SMART rrm1_1 183 257 IPR000504 GO:0003723
Bva08g01153 281 Gene3D - 171 277 IPR012677 -
Bva08g01153 281 SUPERFAMILY RNA-binding domain, RBD 88 257 IPR035979 GO:0003676
Bva08g01153 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Bva08g01153 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 159 IPR000504 GO:0003723
Bva08g01153 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01153 Bva-Chr8 5910226 5913039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01153 90 265 Eukaryotic Initiation Factors Gene Family AT4G34110 30.526 8.73e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01153 - - pdul:117628067 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01153 08 5910226 5913039 Bva08g01153 08 5910226 5913039 ECH