Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01152 ATGGCATCTCTTGGCAACCCAAGAGCTTGGGTTCCTTATATGAACAGCAAAGATTGTTCTCAAGGTTTTTGCAGCTTGTACTGCCCACAGTGGTGCTATATAGTGTATCCTCCACCACCTCCCTATGAATTTCCTGAGGAAGATTCACGCCCCAATTTCTCCCCTCTTGTTATTACTATCGTTGGGATTTTGGCCagtgcttttcttcttgtaagTTACTATACTGTAATCTCCAAGTACTGTGCCAACAGAGAATCTGCACCCAGAGATAACCATGATCCAAATGAGGAATTGGAAGACAATCACAACCCTTCTCTCCACGAGCCATGGCATTCCTCAACCGCCGGCTTAGATGAGGCTCTGATAAAATCAATTACAGTTTGCAAGTACAAGAAAGGTGATGGCTTGCTTGGAGTAACAGATTGCTCTGTTTGTCTCAGTGAGTTTCAAGAAGATGAAAGCGTAAGACTCTTGCCCAAATGCAGCCATGCATTTCATCTTCCTTGCATTGACACATGGCTCAAATCTCACTCCAATTGCCCTCTTTGTCGTGCGAGTATTTTCACCTTCAACCCTTCAGCTCCCCAGGTGGCTGTTCCAATTGTAGAAATTTCTTCAAGGAGTGAAGCTTCAACAGAAAATCAACGTGCAAGCGAAAGGGTAGATTCTGGGAGCGATAGTGAAAGGGATCCagtggaagaagaaataatgcaGGCAAGTGAAGCTCCAAAGCACGCATTGCGTGCTTATAGCGATTTGAGTAGTTTGCAGGGAAGGCACAGTATAATTGAGATTAGAGATGAAGGGTATGATTCCATTAGAAGATCAATCTCTATGGACCATTCATTTCAAAGTGGTCTTTCAGTTGCTGATGTTCTGCATATGAATCAAGACCCAGATACATTAACAGAAGAATGCTCTGCTGAAGCTGGTCCATCTAAGAGATCCAGTGGAGAAAGTAGCAAGTCTAGTTATAAAAGAAGGGTGTTACGTTGCGTACTGAGTCCAATCGCTATGAAGAGATCGTTTTCCAGCGGGAGATTCTCACTCGCCAGGAATGCCAGAGGAAGACAGGGGATTATCCCTGTTTG 1091 0.428 MASLGNPRAWVPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPYEFPEEDSRPNFSPLVITIVGILASAFLLVSYYTVISKYCANRESAPRDNHDPNEELEDNHNPSLHEPWHSSTAGLDEALIKSITVCKYKKGDGLLGVTDCSVCLSEFQEDESVRLLPKCSHAFHLPCIDTWLKSHSNCPLCRASIFTFNPSAPQVAVPIVEISSRSEASTENQRASERVDSGSDSERDPVEEEIMQASEAPKHALRAYSDLSSLQGRHSIIEIRDEGYDSIRRSISMDHSFQSGLSVADVLHMNQDPDTLTEECSAEAGPSKRSSGESSKSSYKRRVLRCVLSPIAMKRSFSSGRFSLARNARGRQGIIPV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01152 363 MobiDBLite consensus disorder prediction 302 322 - -
Bva08g01152 363 MobiDBLite consensus disorder prediction 213 234 - -
Bva08g01152 363 MobiDBLite consensus disorder prediction 85 105 - -
Bva08g01152 363 Pfam Ring finger domain 141 184 IPR001841 -
Bva08g01152 363 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 354 - -
Bva08g01152 363 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Bva08g01152 363 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 354 IPR044675 -
Bva08g01152 363 SMART ring_2 142 183 IPR001841 -
Bva08g01152 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 190 IPR013083 -
Bva08g01152 363 CDD RING-H2_PA-TM-RING 141 184 - -
Bva08g01152 363 MobiDBLite consensus disorder prediction 206 234 - -
Bva08g01152 363 SUPERFAMILY RING/U-box 141 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01152 Bva-Chr8 5906160 5907700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01152 1 355 C3H Transcription Factor Family AT3G03550 39.332 8.41e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01152 - - gmx:100792267 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01152 08 5906160 5907700 Bva11g01283 11 13305427 13306961 BWGD
Bva08g01152 08 5906160 5907700 Bva08g01152 08 5906160 5907700 ECH