Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01149 ATGAGGTGCTGCATCCTTAACATCCTCCATAATTGGAATTTTCACGGAGGGGCTTCGGGTGGCCTTGCGGGTCGTTCTGATGAGGATTCCTCCAACAATGGCCTCGATCAATTAGTGCTTCAACATTTCCCAACTTTCATCTACTCCTCTGTTAAAGAATACCGTAAGCATAAATATGGCCTAGAATGTGCCATTTGCTTAGTGGAGTTCGAGGAAGAGAGCTGGCTTCGATTAATAACCATTTGCCACCATGTTTTTCATCAAGAATGCATTGACCTCTGGCTTCTCTCCCACAAGACATGCCCTGTTTGTCGCAGAGATCTCGATTTGCTGCCGCTAAAGTCCCCCGACAATGCCCGCACGAGCAACAACGAGTCATTTACAGAGGAAGATGTGCGTATTGATATCAAAGAAGGGGAAGGTACAAATGAAGGAGACAACAGAGGAGTTGAGAGACACAAACAAGTGTCACTGCTCCGACAAGGGGGAGATTTGGACAAACATTCGCGGGCGCATTCCACAGGGCATTCGGTAGTTCTCATTAGAGAgaacgaagaagaaagacaggaagaagaagaagaagcagaggaTAAATATACATTAAGATTACCAGATCATGTTAGGATAAAGTTGATAAGAGGACACCAATATGCAAAAAGTTGTATAACTTACGGGGAGATGACAAAACGAGAAGCTTGTAGTAATTGTGGCTTTGTTCAAGAGCCATCTGCCAGCGGTTCCCACGTCAAACCAACTTA 758 0.4248 MRCCILNILHNWNFHGGASGGLAGRSDEDSSNNGLDQLVLQHFPTFIYSSVKEYRKHKYGLECAICLVEFEEESWLRLITICHHVFHQECIDLWLLSHKTCPVCRRDLDLLPLKSPDNARTSNNESFTEEDVRIDIKEGEGTNEGDNRGVERHKQVSLLRQGGDLDKHSRAHSTGHSVVLIRENEEERQEEEEEAEDKYTLRLPDHVRIKLIRGHQYAKSCITYGEMTKREACSNCGFVQEPSASGSHVKPT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01149 252 Coils Coil 181 202 - -
Bva08g01149 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 110 IPR013083 -
Bva08g01149 252 ProSiteProfiles Zinc finger RING-type profile. 63 105 IPR001841 -
Bva08g01149 252 PANTHER RING FINGER DOMAIN-CONTAINING 2 228 - -
Bva08g01149 252 SUPERFAMILY RING/U-box 41 111 - -
Bva08g01149 252 CDD RING-H2_PA-TM-RING 62 105 - -
Bva08g01149 252 MobiDBLite consensus disorder prediction 117 197 - -
Bva08g01149 252 SMART ring_2 63 104 IPR001841 -
Bva08g01149 252 MobiDBLite consensus disorder prediction 124 185 - -
Bva08g01149 252 Pfam Ring finger domain 62 105 IPR001841 -
Bva08g01149 252 PANTHER RING-H2 FINGER PROTEIN ATL29 2 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01149 Bva-Chr8 5893629 5895129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01149 19 213 Rapid Response to Elicitors AT3G05200 37.438 8.17e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01149 - - jre:108984839 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01149 08 5893629 5895129 Bva11g01286 11 13317387 13318352 BWGD