Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01148 ATGGATTACGGTCGAGATGCGGGGTATACCGGTGGAAACGTTGTTCAAATAATCACCGGAGGTGGACCGGATAGTTGGTCCGGTGACCAGGCCATGTGGGCAACCGAGGAAGATTATCGATTTTGGAATAACGGCGATGCTGACACACCTACCAACTCGAATTACGATCAAAGGTCATCCCAATCACGCTCTGGAAGCGAACCCCCTAATAAGAAATCGAGGAATTCTCAAGATGTAACTTCGTCGAATCGATCAAAAGCAATTGGGAAAATGTTCTTCAAGACAAAACTTTGTTGCAAATTCCGAGCTGGGACGTGCCCGTATATCACAAATTGCAATTTCGCTCACAGCATTGAAGAACTTCGTCGGCCACCACCAAATTGGCAAGAAATCGTGGCTGCACACGAGGAAGAAAAAGCCATAATGTCGGAGCCAAGGGAGGAATTTCAGATTCCTTCTATCGGGTCGTCGGGTTTTACTGGGGAGACGCCGAGGTCGTTTAAAGGACGGCACTGCAAGAAGTTCTACACGGAAGAAGGGTGCCCTTATGGAGATAATTGTACATTTCTTCATGACGAGCAATCAAAGAATCGAGAAAGTGTTGCAATAAGTTTAGGCCCTGGTGGGTATGGTGGAGCTTCGAATGGATCCAATTCCAAGCCATCAAATTGGAAAACAAGGATTTGCAATAAATGGGAGATGACAGGATATTGTCCATTTGGAAATAAATGCCATTTTGCTCATGGTGCTGCAGAATTGCACCGGTATGGAGGTGGGCTTATGGAGACAGAGACTAGGGACGCCGCTTCTGCTGCTGCTCCTGACACAAAGCAGGGAGGAGTGGCTTCAAAAACTGCAGTAGATAATGTGGTTGCATCAGTCACTTCAGTTCCTCATTCGGATGTCTATCATATCGGAGTTCCATCTCAAAGGTCTTCCATCGTGATTCAGAAGCCAGGACAAAGAGCTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATTGAATA 1037 0.46 MDYGRDAGYTGGNVVQIITGGGPDSWSGDQAMWATEEDYRFWNNGDADTPTNSNYDQRSSQSRSGSEPPNKKSRNSQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAIMSEPREEFQIPSIGSSGFTGETPRSFKGRHCKKFYTEEGCPYGDNCTFLHDEQSKNRESVAISLGPGGYGGASNGSNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGAAELHRYGGGLMETETRDAASAAAPDTKQGGVASKTAVDNVVASVTSVPHSDVYHIGVPSQRSSIVIQKPGQRAHQKWKGPDKISRIYGDWIDDIE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01148 345 SUPERFAMILY CCCH zinc finger 90 123 IPR036855 GO:0046872
Bva08g01148 345 Gene3D - 216 255 - -
Bva08g01148 345 Gene3D - 87 123 - -
Bva08g01148 345 Gene3D - 160 206 - -
Bva08g01148 345 SUPERFAMILY CCCH zinc finger 221 254 IPR036855 GO:0046872
Bva08g01148 345 Pfam CCCH-type zinc finger 170 192 IPR041367 -
Bva08g01148 345 SMART c3hfinal6 92 118 IPR000571 GO:0046872
Bva08g01148 345 SMART c3hfinal6 166 193 IPR000571 GO:0046872
Bva08g01148 345 SMART c3hfinal6 223 250 IPR000571 GO:0046872
Bva08g01148 345 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 1 342 - -
Bva08g01148 345 ProSiteProfiles Zinc finger C3H1-type profile. 223 251 IPR000571 GO:0046872
Bva08g01148 345 ProSiteProfiles Zinc finger C3H1-type profile. 92 119 IPR000571 GO:0046872
Bva08g01148 345 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 342 IPR045877 GO:0003729
Bva08g01148 345 MobiDBLite consensus disorder prediction 42 83 - -
Bva08g01148 345 MobiDBLite consensus disorder prediction 45 83 - -
Bva08g01148 345 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872
Bva08g01148 345 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 224 249 IPR000571 GO:0046872
Bva08g01148 345 ProSiteProfiles Zinc finger C3H1-type profile. 166 194 IPR000571 GO:0046872
Bva08g01148 345 SUPERFAMILY CCCH zinc finger 165 194 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01148 Bva-Chr8 5891022 5895129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01148 225 253 C3H Transcription Factor Family AT1G68200 62.069 2.69e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva08g01148 zf-CCCH 1.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01148 - - qsu:112034888 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01148 08 5891022 5895129 Bva08g01148 08 5891022 5895129 ECH