Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01142 ATGGGTAGGCCACCATGTTGTGACGAGATTGGTGTGAAGAAAGGGCCGTGGACACCAGAAGAAGATGTGAAGTTGGTCGATTACATTAGCAAACATGGGCAAGGAAACTGGAGAACTCTTCCAAAGCATGCAGGTCTCAATAGGTGTGGAAAGAGCTGCAGGCTAAGGTGGACAAATTATCTGAGGCCTGATATTAAGAGAGGAAAATTCACTGAAGAAGAGGAGAGAATGATCATCAACCTTCATTCAGTTCTTGGAAACAAgTGGTCTAAGATGGCAGCCCATCTTCCGGGAAGAACTGATAATGAAATCAAGAATTTCTGGAACACCCACATTAGGAAAAAGCTTCTTCAGATGGGTATTGACCCAGAAACTCACAGGCCAAGAACCGACTTAAATCACTTAATGAGTCTTTCAGAGTTGCTTGGCATAGCGACAAACTTGGGCAATTTAATGGGTCCCTGGGGAAATCCTCTTGGCTTACAAGCAGATGTCACCCAATTAGCCAAACTCCAACAGCTGCAAACTTTGCTGCAAATTTTGAATAACAACTCAGTTGTTAATATGAATAACCCTTGGCTCTTGGGGAATAACACCCTTGCCCTCAACCCAATTGAAGCATTTCTCAGTAAGACAAACACTCCTCACCTCCAAAACCCAGGTCTATTCCCTCAGGCACAAGGTGATTTCTCTCAggatatttcaaaatcatggACAGACATAGAAGGTGGATCTCATGCAGAAGCTCTTGGTTtcaacaacagcagcagcacTTCACAAGAAACTCATAACGAAAACACTCTTCCTGCATTAGTTTCATCCTCAACAGGCGCTAACACTTTCAACCAAATGGACACTTGTAAACAAGCTCAAATGTCCTCTCAATCACCTTCCTCCACAATATTTGAAGCTTGGGAAAAACTTTTGGATGATGAAGAAAGCGGTTCCTATTGGAAAGAAATTCTCGACTTGACATCAACTTCAGCATCGCCAATTTCGTGGTA 1004 0.4133 MGRPPCCDEIGVKKGPWTPEEDVKLVDYISKHGQGNWRTLPKHAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERMIINLHSVLGNKWSKMAAHLPGRTDNEIKNFWNTHIRKKLLQMGIDPETHRPRTDLNHLMSLSELLGIATNLGNLMGPWGNPLGLQADVTQLAKLQQLQTLLQILNNNSVVNMNNPWLLGNNTLALNPIEAFLSKTNTPHLQNPGLFPQAQGDFSQDISKSWTDIEGGSHAEALGFNNSSSTSQETHNENTLPALVSSSTGANTFNQMDTCKQAQMSSQSPSSTIFEAWEKLLDDEESGSYWKEILE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01142 323 CDD SANT 69 112 IPR001005 -
Bva08g01142 323 Gene3D - 13 66 - -
Bva08g01142 323 CDD SANT 16 61 IPR001005 -
Bva08g01142 323 MobiDBLite consensus disorder prediction 251 275 - -
Bva08g01142 323 Gene3D - 69 116 - -
Bva08g01142 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva08g01142 323 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Bva08g01142 323 PANTHER MYB TRANSCRIPTION FACTOR 1 323 - -
Bva08g01142 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva08g01142 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva08g01142 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva08g01142 323 SMART sant 13 63 IPR001005 -
Bva08g01142 323 SMART sant 66 114 IPR001005 -
Bva08g01142 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 323 - -
Bva08g01142 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva08g01142 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01142 Bva-Chr8 5865767 5866852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01142 1 323 MYB Transcription Factor Family AT3G02940 48.060 1.99e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva08g01142 Myb_DNA-binding 9.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01142 K09422 - gmx:100803906 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01142 08 5865767 5866852 Bva11g01296 11 13348714 13349820 BWGD
Bva08g01142 08 5865767 5866852 Bva08g01142 08 5865767 5866852 ECH