Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01141 ATGTCAGACCGGAGTACATTCTCCGGCGGCTCGGCCGgggagagaaagaaggaagaagagggAGTTAATAAGAAGCAGCACAAAGTTCCTCTGCTAAAGCTCTTCTCTTTTGCTGACTTTTATGATTATGTCTTGATGGCTATTGGATCTATTGGTGCATGTATTCATGGTGCTTCTGTGCCtgttttctttatcttctttggaaagttgataaatattattggCTTGGCTTATCTTTTTCCCAAGGAAGCTTCTCACAAAGTTGCCAAGTACTCATTGGATTTTGTGTATCTCAGTATagcaatattattttcatcttggATAGagGTGGCTTGTTGGATGCATACTGGGGAACGTCAAGCATCAAAGATGAGAATGGCTTATTTAAGGGCACTGTTGAATCAAGATATAAGTATTTTTGACACTGAGGCATCGACCGGAGAGGTTATTTCTGCTATTACCAGTGACATCATCGTTGTTCAAGATGCACTATCAGAGAAGGTAGGGAACTTTATGCACTATATCAGCCGGTTTTTAGCAGGCTTTACGATTGGCTTTGTCAGAGTGTGGCAAATCAGTTTAGTGACACTTTCAATTGTACCCTTGATTGCCCTTGCCGGAGGTCTTTACGCATACGTGACAATAGGCCTCATTGCAAAAGTTCGTAAAGCCTATGTGAGGGCTGGTGAAATCGCCGAGGAGGTATTAGGCAACGTTAGAACGGTGCAAGCATTTGCTGGAGAAGAAGGAGCAGTAAGATTATACAGAGAGGCTCTGATGAAAACTTACAAAAATGGTCGGAAAGCTGGTTTAGCGAAGGGTCTTGGACTTGGCTCCATGCATTGTGTCCTTTTTCTATCATGGTCCCTGCTTGTTTGGTTCACTAGCGTTGTTGTTCACAAGAATATCTCCAATGGTGGCGACTCTTTCACGACCATGCTGAATGTCGTTATCGCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATCTCTGCATTTATCCGAGCTAAGACAGCAGCATATCCCATTTTGGAGATGATAGAGAGAGATACAGTGAGCAAAATCAGCTCAAAATCTGGTCGCAAATTAAGCAAAGTGGAGGGtcatattcaatttaaagaTATCTGTTTCAGTTATCCATCTCGTCCTGATATGGCTATTTTCAACAATCTTTCTCTCGACATTCCCTCTGGGAAAATTGTAGCCCTAGTGGGAGGAAGTGGATCTGGAAAGAGCACTGTTATATCCTTGATTGAGCGCTTTTATGAACCCCTTTCTGGAGAGATACGATTAGATGGGAATGATATTAGGGAACTTGATCTCAGATGGCTTAGGCAGCAAATTGGGTTGGTTAATCAAGAACCTGCCCTTTTTGCTACAAGCATTAAGGAAAACATACTTTATGGAAAAGATGACGCAACCCTTGAAGAACTTAAACGTGCTGTGAAGCTTTCAGATGCTCAGTCTTTCATAAACAATCTTCCTGATAGATTAGAAACTCAGGTTGGTGAAAGAGGGATACAACTATCAGGTGGACAAAAGCAAAGGATTGCAATATCTCGTGCGATGGTGAAGAATCCATCAATCCTTTTACTAGATGAAGCCACCAGTGCTCTGGATGCAGAGTCTGAGAAGAGTGTACAGGAGGCTCTTGATCGTGTCATGATTGGTAGAACAACAGTAGTAGTTGCTCACAGACTTTCTACAATTAGAAATGCGGATGTGATCGCTGTTGTTCAGGGTGGGAGGATTGTCGAAACTGGCAACCATGAGGAGCTTATTTCCAACCCAAATAGTGCATATGCATCTCTTGTTCAACTCCAAGAGGCAGCATCTTTGCAACACCAACCCACAATGGGTCCTAGCCCTAGCCTGGGGCGGCCACCTAGTATACGATACTCCAGAGAGTTATCTCGTACAACAGCAAGCTTTGGCGGGAGTTTTCGATCAGATAAAGAATCTGGTGGTGTTGTTTGTGCTGATGAAGTGGAAAAAGTTGGCAAGTCAAGTCATGTTTCAGCAAGAAGACTATATTCTATGGTCCGGCCTGACTGGCTTTATGGGTTATGTGGCACCTTTTGTGCATTTATTGCTGGAGCACAGATGCCACTGTTTGCCCTGGGAATCTCTCATgctcttgtatcatattatatgGACTGGGATACAACACGAAgggaagttaaaaaaattgctttccTCTTCTGTGGGGCAGCTGTGGTGACTGTCATTGTGCACGCCATTGAACATCTTTGTTTTGGAATCATGGGAGAACGACTTACTCTTCGTGTGCGAGAAATGATGTTTTCAGCTATCCTGAAGAATGAAATTGGCTGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCCCGTTTGGAGAGAGATGCAACTTTATTACGAACTATAGTTGTTGATCGGTCTACTATTCTCTTACAGAATGTTGGTCTGGTTGTTTGTGCATTCATTATTGCCTTCATGTTGAACTGGAGGTTAACACTTGTTGTCTTGGCCACATATCCTTTGGTCATTAGCGGCCACATCAGCGAGAAACTTTTCATGCAAGGCTATGGTGGCAACCTGAACGAAGCATATCTAAAAGCCAATATGATGGCTGGGGAGGCTGTGAGTAACATACGTACTGTGGCTGCATTCTGTTCTGAAGAAAAGATCATTGACCTTTATGCTAATGAGCTTGTTGAGCCTTCCAAGCAGTCATTTACAAGGGGGCAAATTGCAGGCATCTTCTATGGCATTTCCcagttcttcattttctcttcgtATGGCCTTGCCTTGTGGTATGGTTCTGTTTTGATGGAAAAGGAGCTCGCCAGCTTTAAATCAATCATGAAGTCATTTATGGTCTTAATTGTGACAGCACTCGCCATGGGCGAGCTTTTGGCACTTGCGCCAGACCTTTTGAAAGGGAATCAAATGATTGCATCAGTTTTTGATGTGATGGATAGGAAGTCGTTAATAACAAGTGATTCAGGAGAAGAACTAAGGACAGTGGAGGGAACTATAGAACTAAAAAGCATTCATTTCAGCTACCCATCACGGCCAGATGTGTTgatatttaaagattttaatctAAGAGTGCCCTCAGGCAAGAGTATTGCCTTGGTGGGCCAAAGTGGTTCTGGTAAAAGCTCTGTTATTTCCCTTATACTCAGATTTTATGACCCAACATCAGGGAGGGTGATGATCGATGGAAAAGACACAAGGAGACTTAATCTGAAATCTCTCAGGAAACATATTGGTCTTGTGCAACAAGAGCCTGCTCTTTTTGCAACAACAATCcatgaaaatattctttatgGAAAGGAAGGAGCTTCTGATTCAGAAGTAATTGAAGCAGCTAAGCTTGCCAATGCTCATAGTTTTATCAGTGCTCTTCCTGATGGCTATTCCACCAAAGTGGGTGAAAGAGGTGTTCAACTCTCTGGTGGTCAGAGACAAAGGGTGGCCATTGCCAGAGCTGTTCTGAAGAACCCAGAAATTTTGCTGCTAGATGAAGCCACTAGCGCGCTGGACGTCGAATCAGAGCTTGTGGTACATCAAGCACTGGACAGATTGATGAAAAACAGAACGACAGTTATTGTGGCACACAGGCTCTCCACAATAAGGAATGCAGATCAAATCTCAGTTTTACAAGAGGGAAAGATAATTGAGCAAGGGACTCATTCATCTCTTTTAGAGAACAAAAATGGAGCATACTTTAAATTACTCAACCTTCAACATCAACAGCAGCAGCGGCAATA 3761 0.4119 MSDRSTFSGGSAGERKKEEEGVNKKQHKVPLLKLFSFADFYDYVLMAIGSIGACIHGASVPVFFIFFGKLINIIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWIEVACWMHTGERQASKMRMAYLRALLNQDISIFDTEASTGEVISAITSDIIVVQDALSEKVGNFMHYISRFLAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVLGNVRTVQAFAGEEGAVRLYREALMKTYKNGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSVVVHKNISNGGDSFTTMLNVVIAGLSLGQAAPDISAFIRAKTAAYPILEMIERDTVSKISSKSGRKLSKVEGHIQFKDICFSYPSRPDMAIFNNLSLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGEIRLDGNDIRELDLRWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPDRLETQVGERGIQLSGGQKQRIAISRAMVKNPSILLLDEATSALDAESEKSVQEALDRVMIGRTTVVVAHRLSTIRNADVIAVVQGGRIVETGNHEELISNPNSAYASLVQLQEAASLQHQPTMGPSPSLGRPPSIRYSRELSRTTASFGGSFRSDKESGGVVCADEVEKVGKSSHVSARRLYSMVRPDWLYGLCGTFCAFIAGAQMPLFALGISHALVSYYMDWDTTRREVKKIAFLFCGAAVVTVIVHAIEHLCFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSRLERDATLLRTIVVDRSTILLQNVGLVVCAFIIAFMLNWRLTLVVLATYPLVISGHISEKLFMQGYGGNLNEAYLKANMMAGEAVSNIRTVAAFCSEEKIIDLYANELVEPSKQSFTRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSIMKSFMVLIVTALAMGELLALAPDLLKGNQMIASVFDVMDRKSLITSDSGEELRTVEGTIELKSIHFSYPSRPDVLIFKDFNLRVPSGKSIALVGQSGSGKSSVISLILRFYDPTSGRVMIDGKDTRRLNLKSLRKHIGLVQQEPALFATTIHENILYGKEGASDSEVIEAAKLANAHSFISALPDGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESELVVHQALDRLMKNRTTVIVAHRLSTIRNADQISVLQEGKIIEQGTHSSLLENKNGAYFKLLNLQHQQQQRQ 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01141 1253 Pfam ABC transporter transmembrane region 48 318 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva08g01141 1253 Pfam ABC transporter transmembrane region 690 961 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva08g01141 1253 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 343 - -
Bva08g01141 1253 CDD ABC_6TM_Pgp_ABCB1_D2_like 678 993 - -
Bva08g01141 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 606 IPR003439 GO:0005524
Bva08g01141 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 691 975 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva08g01141 1253 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 22 1249 IPR039421 -
Bva08g01141 1253 CDD ABC_MTABC3_MDL1_MDL2 1008 1242 - -
Bva08g01141 1253 SUPERFAMILY ABC transporter transmembrane region 675 989 IPR036640 GO:0005524|GO:0016021
Bva08g01141 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1008 1244 IPR003439 GO:0005524
Bva08g01141 1253 MobiDBLite consensus disorder prediction 1 22 - -
Bva08g01141 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1246 IPR027417 -
Bva08g01141 1253 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Bva08g01141 1253 Gene3D ABC transporter type 1, transmembrane domain 33 612 IPR036640 GO:0005524|GO:0016021
Bva08g01141 1253 Gene3D - 360 609 IPR027417 -
Bva08g01141 1253 Gene3D - 998 1247 IPR027417 -
Bva08g01141 1253 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524
Bva08g01141 1253 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Bva08g01141 1253 SUPERFAMILY ABC transporter transmembrane region 34 340 IPR036640 GO:0005524|GO:0016021
Bva08g01141 1253 SMART AAA_5 397 583 IPR003593 -
Bva08g01141 1253 SMART AAA_5 1035 1227 IPR003593 -
Bva08g01141 1253 Gene3D ABC transporter type 1, transmembrane domain 626 849 IPR036640 GO:0005524|GO:0016021
Bva08g01141 1253 CDD ABC_MTABC3_MDL1_MDL2 370 608 - -
Bva08g01141 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva08g01141 1253 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 22 1249 - -
Bva08g01141 1253 Pfam ABC transporter 389 537 IPR003439 GO:0005524
Bva08g01141 1253 Gene3D ABC transporter type 1, transmembrane domain 922 1251 IPR036640 GO:0005524|GO:0016021
Bva08g01141 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 608 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01141 Bva-Chr8 5854771 5862169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01141 19 1246 Calmodulin-binding Proteins AT2G36910 50.200 0.0 1204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01141 K05658 - gmx:100819045 2132.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01141 08 5854771 5862169 Bva08g01141 08 5854771 5862169 ECH