Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01138 ATGGAGGGAGTTAGTAACGGCGGCGGAGATGGCGGCGCCACCCAGACGCCTGCGCCTGCTCCCATGCCTAATTCCAACGCACCGCCGCCATTTCTTAGTAAGACGTATGACATGGTGGATGATCCCTCTACTGATTCGATTGTGTCGTGGAGCTCAACTAACAACAGCTTCGTGGTTTGGAACCCACCTGAGTTTGCTAGAGACCTGTTGCCTAAGCACTTCAAGCACAATAACTTCTCCAGTTTCGTGAGGCAGCTGAACACATATGGTTTCAGGAAGGTTGATCCAGACCGCTGGGAATTTGCTAATGAGGGATTTTTGAGGGGTCAGAAGCACTTGCTTAGGAATATAACTCGGCGAAAACCTGCCCATGGTCATAGTCATCAACAGACACAACAATCGCATGGACAGAGTTCATCGGTGGGGGTGTGCGTAGAAGTTGGGAAGTTTGGGCTCGAAGAAGAGGTTGAGATACttaaaagagataagaatGTGCTCATGCAGGAGCTTGTGAGGTTGAGACAGCAGCAGCAGGCTACTGATAACCAGCTGCAGACAATGGCTCAGCGCCTTCAAGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTCCAGAGTCCTGGCTTTTTTGCTCAGTTTGTACAACAGCAAAATGGGAGCAATAGGCGAATAACTGAAGCCAACAAAAAGCGGCGAGTGAAGCAGGAAGATATTGAAACAGATAATGCTGCTCCTCCTGATGGACAAATTATTAAGTATCAACCTCCGATGAATGAAGCAGCAAAAGCAATGCTAAGACAGATCATGAAATTGGATTCTTCTCAGATAGAATCGTTTAGTAATAATCCTGACAATTACTTGATTGGTGGTGATTCATCATCATCCACTGTAATGGACAGTGGAAGCTTTTCTAGCCGAACTTCCGGAGTGAGACTTCAAGAGGTCCCACTAACTTCGGTGCAGTTGTCTCACATTCCAGCCGCATCAGGGACTTCAGGGCATGACCCCTCAGTGGGAAAATCTGAAATACAATCTAATCAACAAGCAGCAGCTGAAGTAAAGACAGGAAAATATCAGGATATAAATGTGCTGGTTGGAGCAACAGAGGCGCATTCAGTTCCTGTTCCTCAGGAAGATGTCCTCATGTCCGAGCTTTCTTCAATACCAGAGATGGTGCCAGAAAGTATTCTTGATATTGCTGGAGAAAATTATATTGGGCCTGACACAGGCAGTGAGGGATTTGTCGATCCTGCTTCATTGGGAATGAATGGGTCATTGCCCCTTGATCTTGACAGTATTTCACCTGATCCAGACATTGATGACTTATTACGCAGTCCTTCCTTTTGGGATGATGTTCTTGTGCAGAGTCCACTGCCAGAGGACATTGAACCCAATGCTACTGAAGCATCCAAGGAAAATGAAGTGCAGCCAATGGAAAATGGATGGGACAAAACTCAACATATGGATCGGCTTACAGAGTA 1496 0.4612 MEGVSNGGGDGGATQTPAPAPMPNSNAPPPFLSKTYDMVDDPSTDSIVSWSSTNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRNITRRKPAHGHSHQQTQQSHGQSSSVGVCVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQATDNQLQTMAQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNGSNRRITEANKKRRVKQEDIETDNAAPPDGQIIKYQPPMNEAAKAMLRQIMKLDSSQIESFSNNPDNYLIGGDSSSSTVMDSGSFSSRTSGVRLQEVPLTSVQLSHIPAASGTSGHDPSVGKSEIQSNQQAAAEVKTGKYQDINVLVGATEAHSVPVPQEDVLMSELSSIPEMVPESILDIAGENYIGPDTGSEGFVDPASLGMNGSLPLDLDSISPDPDIDDLLRSPSFWDDVLVQSPLPEDIEPNATEASKENEVQPMENGWDKTQHMDRLTE 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01138 498 Coils Coil 149 176 - -
Bva08g01138 498 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva08g01138 498 SUPERFAMILY "Winged helix" DNA-binding domain 27 120 IPR036390 -
Bva08g01138 498 Gene3D - 23 121 IPR036388 -
Bva08g01138 498 MobiDBLite consensus disorder prediction 295 314 - -
Bva08g01138 498 MobiDBLite consensus disorder prediction 230 246 - -
Bva08g01138 498 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva08g01138 498 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 491 IPR027725 -
Bva08g01138 498 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva08g01138 498 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 7 491 - -
Bva08g01138 498 MobiDBLite consensus disorder prediction 230 257 - -
Bva08g01138 498 MobiDBLite consensus disorder prediction 461 498 - -
Bva08g01138 498 MobiDBLite consensus disorder prediction 1 34 - -
Bva08g01138 498 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva08g01138 498 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva08g01138 498 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01138 Bva-Chr8 5837160 5842698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01138 4 498 HSF AT1G32330 53.267 8.49e-167 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva08g01138 HSF_DNA-bind 5.6e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01138 K09419 - gmx:732544 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01138 08 5837160 5842698 Bva08g01138 08 5837160 5842698 ECH