Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01127 ATGGTGGAAGGAAGGGTTTGTTTATCCAAGGAAGCTAGAAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGAAAAAAAGCCGTTAGTGCCACTGACACTGGAAGTGTTGCTAACATGATGGCCAGAAGCGGAGGAGATGCACTAAGAGCTTCGTCATCATGTGGGGTGAGATTGCATGGTAATGCAGATGTATTTTCCAAGCGGAAGGTAGATAAGTTTGACACGAGTGATCTAGAATGGACTGAAAATATTCCAGAGTGTCCTGTCTATTCTCCAACCAAGGAGGATTTCGATGATCCTTTGGTATATTTGCAGAAGATAGCTCCAGAAGCTTCAAAATATGGTATATGCAAGATAGTTTCTCCTCTGAGTGCTTCTGTTCCTGCTGGGATTGTTTTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGGGTACAGCCACTTCGCCTTGCTGAGTGGGATGCTGAAGACAAAGTTACATTTTTCATGAGCGGAAGAAGTTATACGTTCCGTGATTTCGAAAAAATGGCGAACAAGGTTTATGCGCATAGATATTGCAGTGCCGGTTGTCTTCCTGCCGCATATTTGGAAAAAGAGTTTTGGCATGAAATTGGTTGTGGAAAGATGGAATCGGTTGAGTATGCATGTGATGTTGATGGTAGTGCTTTTTCAAGTTCTCCCACCGATCAGCTTGGAAACAGCAAATGGAATTTGAAGAAATTGTCACGGTTGCCCAAGTCTATTCTGCGTCTCTTGGAAACAACAATTCCGGGAGTAACGGAACCCATGCTCTACATTGGAATGCTTTTTAGTATGTTTGCTTGGCACGTGGAGGATCATTATTTGTACAGTATTAATTATCATCATTGTGGGGCATCAAAAACTTGGTACGGCATTCCAGGTCATGCAGCTTTGGATTTTGAAAGGGTGGCGAGAGAACATGTGTACACTCATGATATTTTGTCCAGTGAGGGAGAAGATGGAGCCTTTGATATTCTTCTGGGGAAAACAACTCTGTTTCCTCCAAATATTCTGTTGGAACATGAAGTTCCTGTCTACAAGGCTGTCCAAAAGCCTGGGGAGTTTATTGTTACCTTCCCAAGAGCTTATCATGCCGGATTCAGTCATGgtTTTAACTGTGGGGAAGCGGTCAACTTTGCAATGGGTGATTGGTTTCCTTTAGGGGCTATTTCTAGCCGGCGGTACGCACTTCTTAATCGGGTGCCTTTGTTGCCTCATGAAGAACTTTTGTGCAAAGAAGCAATGCTTCTCTATACGAGCTTAGAACTTGAAGATGCAGACTTTTCCTCAGCGGACTTGTCATCTCGTAATCGCATCAAGAttgcttttgttaatttgatgCGCTTTCAGCATTGTGCTCGATGGTTCCTTATGAAATCTCGGGCATGTACAAGTGTTTCTACGCATTCTCACAGCACTATTCTCTGTAGCATCTGCAAACGTGATTGTTATGTAGCTTATTTCGATTGCGACTGTCACATGCATCCAGTGTGCCTTCGTCACGATATTGAATCTCTTGACTTCACCTGTGGAAGCAAATACGCTCTTTATTTGAGGGAGGATATTACTAATCTGGAAACTGCAGCCAAGGAGTTTGAGCGGGAGGATGGAGTATCGGATGAGATTCTTAAGCAAATCAAGGGTGACAAAAACATGTACACATATCCTTTGTCAAATATGTTTCAGAGAGCTGAAGCAAATGGGTATACCCCTTATTGTGAGATAAAATGGGATCCTGTTATGGAATTCGATTCAACTCTAGATCAGTCAACAAATAATCAAGAGCATGTTCCACCAAGTGAATTTATTTCGAGACATTGCTCAGAAGATCTTAAACCGCAAGTGTCTGAAGTTCCTTTTTCTACTGCTGCGTCAACTCTTCGTTCTCTGTCAGAACCTCTTGATACCACTTCTGCTCCCAAAAATGAGCAGGAGCAGGAGCAGGCTATCTTTGATTCAGGCATTGTTGATTCTGAAGTGTTTTGTGGAAGATTATCCAATAGTACGTGCGAGTCTTCAGCACAGTACCATGAAATCTCAAGTAAACCTCAAGGCGATCACCATAGATTAGAGATGAAGCCTGTTTTAGATAATCAGAGTGACGATTCTGACTCGGAGATATTCAGAGCAAAGCGGCCTTCTTCTCTGAAGGcccagaaaagaaatatgaacgATGCCATGTCTTCAAAGCATTCTGATCTGCAgGGACTGAAACGATTGAAGAAAGACATTCGTGAAGGAAGAAGTGTGCAACAAGTGGATTCCAACAGAAGTAATGAAACAAGCTGCAAATTTAGTCGCCCTACTAATCATAAAGTTGATGGGGAAAGTTCCTTCAAGGACAGATTTTCAAGGGGCAACAGCATTCCCATTTTTATTAGGTACAAGAAGTTAGGCAATGAGGAAGTAAGTAGACATCAAGGAGGTCGCCACAGGAAAGAGAGATTGCAGCATAATATTAGGGATCCGCATCCACCTCCCATAGACTTTGGGCCGAAGCGCCTGAAAGTCCGAGGCCCTTCATTTACGGGCTTAGAGAACAGATGGAGTTG 2582 0.4218 MVEGRVCLSKEARNGLEFLKRKRLQRKKAVSATDTGSVANMMARSGGDALRASSSCGVRLHGNADVFSKRKVDKFDTSDLEWTENIPECPVYSPTKEDFDDPLVYLQKIAPEASKYGICKIVSPLSASVPAGIVLMKEKAGFKFTTRVQPLRLAEWDAEDKVTFFMSGRSYTFRDFEKMANKVYAHRYCSAGCLPAAYLEKEFWHEIGCGKMESVEYACDVDGSAFSSSPTDQLGNSKWNLKKLSRLPKSILRLLETTIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFERVAREHVYTHDILSSEGEDGAFDILLGKTTLFPPNILLEHEVPVYKAVQKPGEFIVTFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGAISSRRYALLNRVPLLPHEELLCKEAMLLYTSLELEDADFSSADLSSRNRIKIAFVNLMRFQHCARWFLMKSRACTSVSTHSHSTILCSICKRDCYVAYFDCDCHMHPVCLRHDIESLDFTCGSKYALYLREDITNLETAAKEFEREDGVSDEILKQIKGDKNMYTYPLSNMFQRAEANGYTPYCEIKWDPVMEFDSTLDQSTNNQEHVPPSEFISRHCSEDLKPQVSEVPFSTAASTLRSLSEPLDTTSAPKNEQEQEQAIFDSGIVDSEVFCGRLSNSTCESSAQYHEISSKPQGDHHRLEMKPVLDNQSDDSDSEIFRAKRPSSLKAQKRNMNDAMSSKHSDLQGLKRLKKDIREGRSVQQVDSNRSNETSCKFSRPTNHKVDGESSFKDRFSRGNSIPIFIRYKKLGNEEVSRHQGGRHRKERLQHNIRDPHPPPIDFGPKRLKVRGPSFTGLENRWS 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01127 860 MobiDBLite consensus disorder prediction 812 860 - -
Bva08g01127 860 SMART JmjN_1 88 129 IPR003349 -
Bva08g01127 860 MobiDBLite consensus disorder prediction 706 783 - -
Bva08g01127 860 MobiDBLite consensus disorder prediction 706 723 - -
Bva08g01127 860 SMART cupin_9 233 406 IPR003347 -
Bva08g01127 860 MobiDBLite consensus disorder prediction 812 841 - -
Bva08g01127 860 MobiDBLite consensus disorder prediction 761 776 - -
Bva08g01127 860 Coils Coil 525 545 - -
Bva08g01127 860 Gene3D Cupin 89 450 - -
Bva08g01127 860 PANTHER LYSINE-SPECIFIC DEMETHYLASE 50 856 - -
Bva08g01127 860 MobiDBLite consensus disorder prediction 734 760 - -
Bva08g01127 860 ProSiteProfiles JmjN domain profile. 89 130 IPR003349 -
Bva08g01127 860 Pfam C5HC2 zinc finger 486 537 IPR004198 -
Bva08g01127 860 ProSiteProfiles JmjC domain profile. 236 406 IPR003347 -
Bva08g01127 860 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 50 856 - -
Bva08g01127 860 SUPERFAMILY Clavaminate synthase-like 167 422 - -
Bva08g01127 860 Pfam jmjN domain 90 122 IPR003349 -
Bva08g01127 860 Pfam JmjC domain, hydroxylase 266 389 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01127 Bva-Chr8 5779911 5786723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01127 86 546 JUMONJI Transcription Factor Family AT1G30810 32.156 2.56e-62 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva08g01127 JmjC 1.7e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01127 - - gmx:100798611 1350.11