Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01102 ATGGCTAAGAAACACGAAACCGCCATTGTCAGCGAACCAGTAGCCGAACAAATTCCCAACGGAATCAAAGccgagaagaagaaaaagaagaagaaagacaagcAAAACGAAGCTAGTCCCAAAAGGAAGCTCGAGGAAGTTGAGATTCACGATGACACAGAATCTAACAAGAAGAGtaaaaagcacaaaaaatCGAAACAAAACGCGGAGGAAAATGGAACTGTCGAAGGAAATGACGGCAACAGTACCAAAGATGATGAATCGGCGAGAGATGGGTCTGTGGTGGTTACGGGGAAGAATGTCAAAGACGCAAAATACGAGCCATTGAGAACATTTTCTGCTTCAGGGCTTCCAGAAAATGTGCTAGAGTGCTGCAAGAATTTTGAAAGGCCATCCCCTATTCAGTCCCGGGCATGGCCTTTCTTATTGGATGGTCGTGATTTAATTGGAATTGCTGCAACTGGGTCAGGCAAGACATTGGCTTTTGGTATACCGGCTATTATGCATGTTAAGAGCAAGCGCAAGGGTAAAGCGTCAAAAGGACGGAATCCTCTTTGCCTTGTACTCTCTCCCACCAGGGAGCTAGCTCAACAAATTTCGGATGTTATATCTGATGCTGGGAGCTCTTGCGGGGTGGAGTCAATTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATATCTTCATTAAAATCTGGCATTGACATTGTCATTGGAACTCCAGGTCGTATAAAGGATCTGATAGAAATGGGTGTTTGTTGCCTCAAAGAAGTATCATTTGTGgtcCTTGATGAAGCAGACCGAATGCTTGACATGGGATTTGAACAAGCTGTTCGCTCTATACTGGGCCAGACATGTTCTgTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCTCTACCAGTTCACCAATTAGCTCAGGAGTTTATGGATCCTAACCCTGTGAAAGTTGTTGTAGGTTCAGAGGATTTAGCTGCTAATCATGATGTAATGCAGATAGTTGAGGTCTTAGAGGATCATTCACGTGATAAGCGCCTGGCTGCTTTGCTAGAAAAGTATCACGAATCTCAAAgGAACCGAGTATTGGTTTTTGTCTTGTACAAATGGGAAGCCACACGGGTTGAAAATATGCTTCGAGAAGGGGGCTGGAAGGTTGTCTCGATACATGGGGATAAGGCACAAAGTGAACGCACCAAGGCACTATCACTATTCAAGAAGGGAAGCTGTCCTTTGATGATTGCTACCGATGTGGCTGCTCGTGGATTGGATATTCCGGATGTTGAAGTAGTGATCAACTATAGTTTTCCACTTACTACTGAGGATTATGTTCATAGAATAGGGCGGACTGGACGAGCTGGCAAAAAAGGTGTTGCTCATACATTCTTTACAAAGCATAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTAAAAGAAGCAGGACAAGTTGTGCCTGAGGCCCTTTTGAAATTTGGCACGCATGTGAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTAATGCTCCGAAATCTCAAAAAATCACATTTGACAACTCTGATGACGAAGATTA 1589 0.4267 MAKKHETAIVSEPVAEQIPNGIKAEKKKKKKKDKQNEASPKRKLEEVEIHDDTESNKKSKKHKKSKQNAEENGTVEGNDGNSTKDDESARDGSVVVTGKNVKDAKYEPLRTFSASGLPENVLECCKNFERPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVKSKRKGKASKGRNPLCLVLSPTRELAQQISDVISDAGSSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIKDLIEMGVCCLKEVSFVVLDEADRMLDMGFEQAVRSILGQTCSVRQMVMFSATWPLPVHQLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLEDHSRDKRLAALLEKYHESQRNRVLVFVLYKWEATRVENMLREGGWKVVSIHGDKAQSERTKALSLFKKGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTKHNKGLAGELVNVLKEAGQVVPEALLKFGTHVKKKESKLYGAHFKEIPVNAPKSQKITFDNSDDED 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01102 529 SMART helicmild6 372 453 IPR001650 -
Bva08g01102 529 PANTHER BNAA08G07020D PROTEIN 10 515 - -
Bva08g01102 529 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 262 270 IPR000629 -
Bva08g01102 529 Pfam Helicase conserved C-terminal domain 345 453 IPR001650 -
Bva08g01102 529 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 110 136 IPR014014 GO:0003724
Bva08g01102 529 CDD SF2_C_DEAD 330 462 - -
Bva08g01102 529 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 492 IPR001650 -
Bva08g01102 529 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 10 515 - -
Bva08g01102 529 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 316 IPR014001 -
Bva08g01102 529 Pfam DEAD/DEAH box helicase 133 302 IPR011545 GO:0003676|GO:0005524
Bva08g01102 529 CDD DEADc 126 317 - -
Bva08g01102 529 Gene3D - 51 319 IPR027417 -
Bva08g01102 529 Gene3D - 320 495 IPR027417 -
Bva08g01102 529 SMART ultradead3 127 333 IPR014001 -
Bva08g01102 529 MobiDBLite consensus disorder prediction 1 96 - -
Bva08g01102 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 466 IPR027417 -
Bva08g01102 529 MobiDBLite consensus disorder prediction 37 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01102 Bva-Chr8 5625698 5629809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01102 107 461 Eukaryotic Initiation Factors Gene Family AT3G19760 33.613 2.48e-58 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01102 K14811 - gmx:100305353 840.876