Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01100 atggcagTTTGCACAGTATACACAACACAAACACTCAACACCAATTGCCCCATCTCAACACCATCAAAAACCCATTTCAGTTTCCATCAAAAGCAGCTAGTTTTCTACACTACAAGCAAGAGAACCAGCAAGAGAGGCAGCAATTACAGTGGCAGCCCATGTGTGATAACATGTGCTGCAGGTGACTCGCAGACTGTTGTAATTGGTCTAGCAGCAGACTCGGGGTGTGGGAAGAGTACCTTCATGAGGAGACTCACCAGTGTGTTTGGAGGTAGAGCAGAGCCACCCAAGGGTGGCAATCCAGATTCCAACACTCTCATAAGTGACACCACCACAGTGATATGCTTGGATGATTACCATTCATTGGATAGAACAGGTAGAAAGGAGAAGGGTGTCACTGCACTTGACCCAAGAGCCAACGATTTTGATCTTATGTATGAGCAAGTTAAGGCTATCAAAAAAGGGATTGCTGTGGAGAAACCCATTTACAACCACGTCACTGGCCTCTTGGATCCACCAGAGCTCATTAAACCACCCAAAATCTTAGTCATTGAAGGTTTGCATCCAATGTTTGATCCTCGGGTGAGAGATCTTCTAGACTTCAGCATTTACCTAGACATCAGCAATGAGGTCAAATTTGCTTGGAAAATTCagAGAGACATGGCAGAGCGTGGGCACAGCCTTGAAAGCATTAAAGCTAGCATTGAAGCTAGGAAGCCCGATTTTGATGCTTATATTGATCCCCAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACCCAACTAATTCCAGACGATAATGAGGGGAAGATTTTGAGAGTGAGATTGATACAAAAAGAAGGGGTTAAGTATTTTAGCCCCGTTTACTTGTTTGATGATGGCTCCACCGTTTCTTGGATACCATGTGGAAGGAAGCTCACCTGCTCTTACCCTGGCATCAAATTCTTCTATGGACCAGAGACTTACTATGGTCATGAGGTGTCTGTTGTGGAAATGGATGGGCAATTTGACAGATTAGATGAGCTAATATACGTAGAGAGTCATCTAAGCAACCTCTCGAGCAATTTCTATGGAGAAGTTACTCAACAGATGTTGAAGCACGCTGACTTCCCTGGCAGCAACAACGGGACAGGTCTCTTCCAAACCATAATTGGTTTGAAGATAAGAGACTTGTTTGAACAGATTGTAGCCAGCAAGAGTGGAACTCCAGTAGGAGCTGCAAAGGCTTA 1235 0.4405 MAVCTVYTTQTLNTNCPISTPSKTHFSFHQKQLVFYTTSKRTSKRGSNYSGSPCVITCAAGDSQTVVIGLAADSGCGKSTFMRRLTSVFGGRAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKKGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDPRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKYFSPVYLFDDGSTVSWIPCGRKLTCSYPGIKFFYGPETYYGHEVSVVEMDGQFDRLDELIYVESHLSNLSSNFYGEVTQQMLKHADFPGSNNGTGLFQTIIGLKIRDLFEQIVASKSGTPVGAAKA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01100 411 Pfam Phosphoribulokinase / Uridine kinase family 67 265 IPR006083 GO:0005524|GO:0016301
Bva08g01100 411 CDD PRK 67 355 - -
Bva08g01100 411 PRINTS Phosphoribulokinase family signature 72 89 IPR006082 GO:0005524|GO:0005975|GO:0008974
Bva08g01100 411 PRINTS Phosphoribulokinase family signature 234 257 IPR006082 GO:0005524|GO:0005975|GO:0008974
Bva08g01100 411 PRINTS Phosphoribulokinase family signature 181 199 IPR006082 GO:0005524|GO:0005975|GO:0008974
Bva08g01100 411 PRINTS Phosphoribulokinase family signature 216 233 IPR006082 GO:0005524|GO:0005975|GO:0008974
Bva08g01100 411 Gene3D - 62 296 IPR027417 -
Bva08g01100 411 PANTHER URIDINE KINASE 7 411 - -
Bva08g01100 411 PANTHER PHOSPHORIBULOKINASE 7 411 - -
Bva08g01100 411 ProSitePatterns Phosphoribulokinase signature. 216 229 IPR006082 GO:0005524|GO:0005975|GO:0008974
Bva08g01100 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 336 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01100 Bva-Chr8 5613530 5616370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01100 119 293 PRT Gene Family AT3G27440 26.966 6.00e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01100 K00855 - tcc:18606857 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01100 08 5613530 5616370 Bva08g01100 08 5613530 5616370 ECH