Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01079 ATGAGCGGTCCGCCGATGTGGACGGCAACCCATCCACCGTTCACGGTGGCGCAATGGCAGGAGCTGGAACACCAAGCTCTCATTTTCAAGTATCTCAAGGCGGGTTTGCCTGTTCCCCCTGACCTCCTCGCGCCCATTCGCAAGAGTTTCCAGTTGATGTCTGACAAGTTCGTACCTCACCCAGCTCTGGGTTATTACTCCTATTACGGGAAGAAGATAGACCCAGAACCTGGAAGGTGTCGGAGAACGGATGGCAAGAAGTGGAGGTGCTCCAGAGATGCACATCCGGACTCCAAGTACTGTGAGCGGCACATGATCCGCCGCCGCTACCGTTCAAGAAAGCCTGTGGAATCACAAGCTGCTCCTCAGTCTTTGTCCACTGTGGGATCAGAAGTTGCTAATGGGAGCAGAACTGGCTGTGGAAGCTTCCCCAGCCTACCTTTGCACACTAGTGGTACCCGTGAGGGTTTAAACCTTGGAAACAACGTATCTGAGCTGCAGATAGAGTCTCTTCACAGTGAGATTGGCAAGAAGGAGTACAGGTTTGCACTGAGCTCTGAAGCAGATGAGCACAACATGGTACAGAAAAGCTTGGGAAGTGTGAAGCATCCTGGTTTTGACTCTACATCAGATGGCATGTGGTCTCATGTATCACAGATTCCCTCAAACTCCGTCTCAGAATCCAGAAATATTTTGGTTAGCAGCTCTTTCCAACTACGGGCAATGCAAGATGCTGAGCCATTGAATATTGACGCTGCGAGATCCAAGCAACAACATGTCTTTGATGGGCAGTTAAGTTCAGCTGGGTATTTGAAACAGGAACAACAGCCCCCTCAGAGTCTCTTCAGTGACTGGCAGTGGAAGAGGGAGTCAGGCTCCCCTGCCATTCAGTTTAAAATCAGTAAAGATTCTAACTGCAACTCGGATGTGAACGTTGATTTCATTGGATCTTTATG 956 0.499 MSGPPMWTATHPPFTVAQWQELEHQALIFKYLKAGLPVPPDLLAPIRKSFQLMSDKFVPHPALGYYSYYGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCERHMIRRRYRSRKPVESQAAPQSLSTVGSEVANGSRTGCGSFPSLPLHTSGTREGLNLGNNVSELQIESLHSEIGKKEYRFALSSEADEHNMVQKSLGSVKHPGFDSTSDGMWSHVSQIPSNSVSESRNILVSSSFQLRAMQDAEPLNIDAARSKQQHVFDGQLSSAGYLKQEQQPPQSLFSDWQWKRESGSPAIQFKISKDSNCNSDVNVDFIGSL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01079 318 PANTHER - 1 314 IPR031137 GO:0005634|GO:0006351|GO:0032502
Bva08g01079 318 Pfam QLQ 13 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bva08g01079 318 Pfam WRC 75 117 IPR014977 -
Bva08g01079 318 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bva08g01079 318 MobiDBLite consensus disorder prediction 111 133 - -
Bva08g01079 318 ProSiteProfiles WRC domain profile. 74 118 IPR014977 -
Bva08g01079 318 PANTHER GROWTH-REGULATING FACTOR 1 314 - -
Bva08g01079 318 MobiDBLite consensus disorder prediction 117 133 - -
Bva08g01079 318 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01079 Bva-Chr8 5518172 5520820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01079 1 117 GRF Transcription Factor Family AT3G13960 57.025 5.71e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Bva08g01079 WRC 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01079 - - lja:Lj2g3v1537380.1 384.8