Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01069 ATGGCTGCAAATCTCACGGAAGGAGCAATAACGTTTATGTGCAGGGATGATTTCTCTTCGGAGGATTTGAAACCGGTGCTCCAAGTCATCGACTTGAAGCTTGTGCAAGCCCAGCAGCATAGCGCCACTGAGAGGTATAGGCTTGTGCTTTCGGATGGTTCGCATTATCAGCAAGGGATGCTCGCTACTCAGAAGAATGAATTGGTCCATACTGGAAGGTTGCAGAAAGGCTCCGTCGTTAGATTAACACAGTATATCTGTAACGTTGTCCAGAATCGCAAgattatcatcatcattgaGCTCGATGTGGTGCTTGAAAAGTGTGATCTGATTGGAGAACCTGCACCAGCACCAAGAACTGTTCCCACGCAATCTTCCACTGGTCAGTCAGGAGTAACTGCTGGAAATCCCCAGTCTGTGAGTAACACTTCATCAAGAGCAAATGTGGCTGGAGCCACTGGGCCATCTGTCGATCCTCCAAGAATGAACCATCCTGCCAATAATGCTTACTCTAGTGGTTCTGACTCTGTAAGATATGGTGCATCAAATACTTTTCCTAAATCAGAGCCTGGAGCCACCATGCCTAAGCCAATGCCATTTAATGCGTCATATGGTGATCAGATCAGTTTTCGCAATCCCCAATCAGAACCTTCAAGGCCATTGCAGAATTCTTTTGCTCGTCCTCCACAGTCAATATATCGACAGCCGTCACCAGTATACTCTAATAGAGGACCAATAGCAAGAAATGAAGCTGCGCCAAGGATAATTCCAATTGGTGCATTGAATCCATACCAGAATATGTGGACAATCAAGGTTAGAGTAACAGCAAAGGGAGAACTCAGGCACTACAATAATCCCCGAGGTGAAGGAaaagtgttttcttttgatcttCTAGACTCTGAAGGTGGAGAAATTCGTGCAACTTGCTTTAACGCTGTGGCTGACCAGTTCTACCATCAAATTGAAGTTGGCAAAGTCTATCTAATTTCTAAGGGAAGTATAAAACCAGctcaaaagaattttaatcaCCTTCGCAATGATATGGAACTGACCCTTGATATGACATCAGCTATACAGCTATGCCCTGACGATGACAACTCAATTCCAAAGCAACAGTTCCATTTCCGTTCCGTTAGTGAAGTTGAAAGTATGGAAAATAACAGTGTTGTGGATATGATTGGCGTGGTGTCTTCCATTAGTCCTGCAGCTTcaataatgagaaaaaatgGTACTGAAACTCAGAAAAGAGTCCTCCAGTTGAAAGACATGTCTTGCCGAAGTGTTGAATTAACTTTATGGGGAAATTTTTGCAACGCAGAAGGACAAAGGCTGCAAAGTATTTGTGATTCTGGGGCTTTCCCAGTTTTGGCTGTGAAAGCTGCCAGAGTAAATGATTTCAGTGGAAAGGCTGTTGGGACCATAACCACAAGTCAGCTATTTATAGACCCTGATTTTCCAGAGGCTTATAGGCTAAAAGAATGGTTTGACAGAGAAGGGAGGACCACTCCAACAGTATCAATTTCCAGAGAAATATCTAATATTGGCAGTACAAATATAAGAAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATCACTGTCTGTGCAAGTGTTTCATTCGTTAAGGTTGATAATTTCTGCTACACGGCTTGTCCTATCATGATAGGGGATAGGCAATGTAACAAAAAAGTGACTAATAATGGAGATGGGAAATGGCGGTGTGATAGGTGTGATCAGACTATTGATAATTGTGACTATAGGTATATACTACAACTCCAGATACAGGACCATACAGGCGTAACATGGGTTACTACTTTTCAGGAGTGTGGTGAGGAGATCATGGGTGTTCCTGCCAAAGATCTGTATTATTTGAAATACGAAGAGCAAgatgatgaaaaattttcagaaataatCCGTAAGGTTctcttcaataaatatatattcaagttGAAAGTAAAGGAGGAGACATTCAGTGATGAGCAGCGTGTAAAGTCGACCGTAGTAAAAGCAGACAAAGTAAACTTCTCATCTGAATCTAAATTTGTTCTGGACTTGATTGATAAGCTTAAAGCTGATGGGGCAGCAGACCTGAATCATAACTTCGTAATTAATAATACTGGACTCGGGAATGTTGGAAGTGGACAAGCTACCCCACCAGTTTATAATCAGGGAGGTCATTATGCTGGTAGAGAATATGGGACAACAGCTAATCAAGGTCAGTATGTAAACCAATATAATGGTTATTTTCCTTCGACTGGCGGTTCTGGTTCATCTTGTAACAACTGTGGAGGCGCTGGTCATAGCTCTGGAAGTTGCCCAAACATTATGAAACAGATCAAGAACTCACCAGGGGGTTCTGGCCTGTCTGCTGGAGTGCCCTTTGCTGACAGGGCATCTGCTGGGTCAAGCGGTGGCGCTGCCCCTGGTGAATGCTTTAAATGCCATCAAACAGGCCATTGGGCAAGAGATTGTCCTGGTTTTAGTGCAGTCCCTCCGGCTTATGGAAGCACCAGTGGAATGCCAGCAAGGTATGGGGTTGTTCAAAAGCAAGAGCTTGGTGGATTCTG 2591 0.4195 MAANLTEGAITFMCRDDFSSEDLKPVLQVIDLKLVQAQQHSATERYRLVLSDGSHYQQGMLATQKNELVHTGRLQKGSVVRLTQYICNVVQNRKIIIIIELDVVLEKCDLIGEPAPAPRTVPTQSSTGQSGVTAGNPQSVSNTSSRANVAGATGPSVDPPRMNHPANNAYSSGSDSVRYGASNTFPKSEPGATMPKPMPFNASYGDQISFRNPQSEPSRPLQNSFARPPQSIYRQPSPVYSNRGPIARNEAAPRIIPIGALNPYQNMWTIKVRVTAKGELRHYNNPRGEGKVFSFDLLDSEGGEIRATCFNAVADQFYHQIEVGKVYLISKGSIKPAQKNFNHLRNDMELTLDMTSAIQLCPDDDNSIPKQQFHFRSVSEVESMENNSVVDMIGVVSSISPAASIMRKNGTETQKRVLQLKDMSCRSVELTLWGNFCNAEGQRLQSICDSGAFPVLAVKAARVNDFSGKAVGTITTSQLFIDPDFPEAYRLKEWFDREGRTTPTVSISREISNIGSTNIRKTISQIKDEKLGTSEKPDWITVCASVSFVKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQTIDNCDYRYILQLQIQDHTGVTWVTTFQECGEEIMGVPAKDLYYLKYEEQDDEKFSEIIRKVLFNKYIFKLKVKEETFSDEQRVKSTVVKADKVNFSSESKFVLDLIDKLKADGAADLNHNFVINNTGLGNVGSGQATPPVYNQGGHYAGREYGTTANQGQYVNQYNGYFPSTGGSGSSCNNCGGAGHSSGSCPNIMKQIKNSPGGSGLSAGVPFADRASAGSSGGAAPGECFKCHQTGHWARDCPGFSAVPPAYGSTSGMPARYGVVQKQELGGF 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01069 863 MobiDBLite consensus disorder prediction 165 189 - -
Bva08g01069 863 Gene3D - 366 506 IPR012340 -
Bva08g01069 863 Pfam OB-fold nucleic acid binding domain 268 350 IPR004365 GO:0003676
Bva08g01069 863 MobiDBLite consensus disorder prediction 205 238 - -
Bva08g01069 863 CDD RPA1_DBD_A 257 360 - -
Bva08g01069 863 SUPERFAMILY Nucleic acid-binding proteins 373 501 IPR012340 -
Bva08g01069 863 ProSiteProfiles Zinc finger CCHC-type profile. 819 833 IPR001878 GO:0003676|GO:0008270
Bva08g01069 863 ProSiteProfiles Zinc finger CCHC-type profile. 767 782 IPR001878 GO:0003676|GO:0008270
Bva08g01069 863 SUPERFAMILY Retrovirus zinc finger-like domains 753 788 IPR036875 GO:0003676|GO:0008270
Bva08g01069 863 Pfam Zinc knuckle 818 833 IPR001878 GO:0003676|GO:0008270
Bva08g01069 863 CDD RPA1_DBD_C 523 696 IPR013955 -
Bva08g01069 863 Pfam Replication factor-A C terminal domain 539 689 IPR013955 -
Bva08g01069 863 CDD RPA1_DBD_B 389 496 - -
Bva08g01069 863 Gene3D - 254 364 IPR012340 -
Bva08g01069 863 PANTHER REPLICATION FACTOR A 1, RFA1 3 734 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bva08g01069 863 SUPERFAMILY Retrovirus zinc finger-like domains 808 837 IPR036875 GO:0003676|GO:0008270
Bva08g01069 863 Gene3D - 759 841 - -
Bva08g01069 863 SUPERFAMILY Nucleic acid-binding proteins 520 697 IPR012340 -
Bva08g01069 863 Gene3D - 3 117 IPR012340 -
Bva08g01069 863 Pfam Replication factor-A protein 1, N-terminal domain 5 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bva08g01069 863 MobiDBLite consensus disorder prediction 115 244 - -
Bva08g01069 863 Pfam Replication protein A OB domain 379 482 IPR031657 -
Bva08g01069 863 SMART c2hcfinal6 766 782 IPR001878 GO:0003676|GO:0008270
Bva08g01069 863 SMART c2hcfinal6 818 834 IPR001878 GO:0003676|GO:0008270
Bva08g01069 863 Gene3D - 507 697 IPR012340 -
Bva08g01069 863 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bva08g01069 863 PANTHER REPLICATION PROTEIN A SUBUNIT 3 734 - -
Bva08g01069 863 SUPERFAMILY Nucleic acid-binding proteins 255 368 IPR012340 -
Bva08g01069 863 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Bva08g01069 863 MobiDBLite consensus disorder prediction 119 151 - -
Bva08g01069 863 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 229 696 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01069 Bva-Chr8 5462815 5467115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01069 1 801 Core DNA Replication Machinery Family AT5G45400 52.914 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01069 K07466 - jre:109004017 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01069 08 5462815 5467115 Bva08g01069 08 5462815 5467115 ECH